Query= MSMg01no382_f07.b1 MSMg01no382_f07.b1 CHROMAT_FILE:
MSMg01no382_f07.b1 PHD_FILE: MSMg01no382_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
(589 letters)
>mm_chr1_143356789_143357777
Length = 989
Score = 1067 bits (552), Expect = 0.0
Identities = 578/588 (98%), Gaps = 4/588 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttcttattcca--tcacgtttaaggagcctgagacatgtcattttcagcatt 61
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcttag--cagatcacgtttaaggagcctgagacatgtcattttcagcatt 261
Query: 62 ctggctggaaagtttctgtgcataataataagctaacatgcattttactcatgtaactat 121
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 262 ctggctggaaagtttctatgcataataataagctaacctgcattttactcatgtaactat 321
Query: 122 ttttaaattcttggctttcatcatatttccaaagctcacgtctttctagaagctttatga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttttaaattcttggctttcatcatatttccaaagctcacgtctttctagaagctttatga 381
Query: 182 tgtttacacttttcttttgatttttcaataatgccatatatttattgggtacaatgtaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtttacacttttcttttgatttttcaataatgccatatatttattgggtacaatgtaaa 441
Query: 242 atttatgtataatgtgaaagtgtttaatgacaagcagggtaacatatccattatgttgaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atttatgtataatgtgaaagtgtttaatgacaagcagggtaacatatccattatgttgaa 501
Query: 302 aatgtagcattttcttgttttaggaaacaagaaacttctttttcactctaatttttaatc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatgtagcattttcttgttttaggaaacaagaaacttctttttcactctaatttttaatc 561
Query: 362 ctcactaaaatagaactgtagaaatataaaacctactactcatttgcaacaaaggttttg 421
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 562 ctcactaaaatagaactgtagaaatataaaacctaccactcatttgcaacaaaggttttg 621
Query: 422 tatatgaaaactaacctggttattctcatcttccagtaactatgatttcatatggcatat 481
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 622 tatatgaaaactaacctggttattctcatcttccagtaactatgattccatatgacatat 681
Query: 482 gaaataatagatcaagttacctagtttccttataggggcaatatatttatcgtttgcatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaaataatagatcaagttacctagtttccttataggggcaatatatttatcgtttgcatt 741
Query: 542 ttgtgccatttttattttcatttattccaccattaattatatatctaa 589
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttgtgccatttttattttcatttattccaccattaattatatatctaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_f07.g1 MSMg01no382_f07.g1 CHROMAT_FILE:
MSMg01no382_f07.g1 PHD_FILE: MSMg01no382_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:03 2005
(496 letters)
>mm_chr1_143524462_143525357
Length = 896
Score = 924 bits (478), Expect = 0.0
Identities = 494/502 (98%), Gaps = 6/502 (1%)
Strand = Plus / Minus
Query: 1 gccaccttggtctatagagtgagttccaggacagccagggctacacagagaaaccctgtc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gccagcttggtctatagagtgagttccaggacagccagggctacacagagaaaccctgtc 533
Query: 61 tcaaaaaacaaaacgaac-----aaaaaaaataaataaagacaatatttaaccattaaca 115
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcaaaaaacaaaacgaacaaaaaaaaaaaaataaataaagacaatatttaaccattaaca 473
Query: 116 ataattttgtctttaccatcactaatttttttcatttttatttgtatgtatttttgagct 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ataattttgtctttaccatcactaatttttttcatttttatttgtatgtatttttgagct 413
Query: 176 ttagtgttattgctataacatttaatatttctattttctcctctctgatattacatggga 235
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttagtgttattactataacatttaatatttctattttctcctctctgatattacatggga 353
Query: 236 gatacagatttgaaattacatttcaataactctccacttatttttagtctcatcttctac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gatacagatttgaaattacatttcaataactctccacttatttttagtctcatcttctac 293
Query: 296 tgtttcagtgtgtctgatgttataaaatctacatgactaaaagcaactggggtaggagag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgtttcagtgtgtctgatgttataaaatctacatgactaaaagcaactggggtaggagag 233
Query: 356 agtttatttcatttggtattttgtcatgttgaagattcagtcggaaaatcag-aaaaaaa 414
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 232 agtttatttcatttggtattttgtcatgttgaagattcagtcggaaaatcagaaaaaaaa 173
Query: 415 aattcttccacaacgaatttaacctcgtgcccttacgctgaagaatgacaaagataagca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aattcttccacaacgaatttaacctcgtgcccttacgctgaagaatgacaaagataagca 113
Query: 475 cctgttggccctgccaaagcac 496
||||||||||||||||||||||
Sbjct: 112 cctgttggccctgccaaagcac 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
