BAC Information

Click to search

BAC

Clone NameMSMg01-382F08
Chromosome1 (Build37)
Map Location 10,861,564 - 11,057,461
singlet/doubletdoublet
Overlap genenone
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382F08.T7 (MSMg01no382_f08.b1)MSMg01-382F08.TJ (MSMg01no382_f08.g1)
ACCAG486261AG486262
length773775
length of high quality
(start - end)		470 (29 - 498)512 (60 - 571)
definitionCHROMAT_FILE: MSMg01no382_f08.b1 PHD_FILE: MSMg01no382_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:03 2005CHROMAT_FILE: MSMg01no382_f08.g1 PHD_FILE: MSMg01no382_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,056,997 - 11,057,461)(10,861,564 - 10,862,075)
sequence
CGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTTTCCAAATC
TCAAGACTTTTGCTATCACAATCTCTGGTCTCTCTTACCATCTGTAAAGA
TGTTCTTAAAGGAGTTATGATTAATAACTATCAAAGGAGCCCAGTGAAAA
ACACAGATAATTTATTGATCAAATATGAGAACATAGAATGTCCTTTGTAA
TTTCAAAGACACACAGAATAGTAAGTACTATTTCATATAGCCAGCAGCAC
ATGTATCAAATCACTTGCCTCAAGAGATGATATGAGCCACAACAAGAGTA
AAGTTCAGAAATCTGAGCGACATTTACGGGTGATAGATTCATAATGCGGT
ACTAAGGAAATGGCTGTCGGGAACAAAGTTTCCATGACCATGTTTGGCCT
GGGATGACAATTTCTCCAGCTGGCAGGGGGATCTAATTCTTCTGTGAAGG
GAAACTGGCTTGAAGAAGTGGATATGAACATCACAGCTTCCAGCCATAAC
CAAGAAATGCATAGTGGAATCCACTCAGACCTGAGGAACGTTTTCCTTTT
GACGAATTATCTTTATGAAATACAGATTACAAAAAGAGCCTGTTCCTCTC
ATATAGATTAAGACACTACAAGATATATGATGACTTGGAAAACTTACTCT
CAAGCTTCTTTTGGGAAATTATAACCCTCTCCTCCCTGGCTTAAACAACA
CTCTGGGGCCACCTTCTTATTCTGGTATTCTTTCCTAAAAATTACCCCTA
TTGGTATGGGATTCTACCTCTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAATGGATAAATAAAGATGAAAGAAAAGAAAGATTATTGCT
AGGTAAATACCACAAGAAAGCAACAGAAGATACAATGATAACTATTAAAT
TTCCAAGCAAAAGCTAGCAGAAAGATGTTGCTGGGCCGGTGCCAGCAGCA
CTATGCCTGCCAGTACAATTTTCAGAGTCTGTTGACTGCAATCTTGCTGA
TTGGATGTATGTGTGCATATATCTGATCCTTGGCACGAGAATCCTGGACA
AAAATAAAACTGCACTACTTGGAATATTTTGGAATATTTGGAAGTGTGCC
TAAATTGGTGAACACAAGAGTCCTTATTTTGCCATATGGCATATAGAGAT
GGCCTTCACATCCCCTTCATGAAACAGCTTTGAAAACTGCCAATGCGTGA
TTGCTATTAGATTCAGTTAATAAGATCTTGCCTCCAGAAAATAATGGGAA
GAATGGTTGGCCCTTTTATCTCAGAACATGGAATGAGATAAATTTCGAGA
CACCCTGCTCTAATTTTATGCTATTGGACCAATGAACTATATATAAATTA
AGTAACAATTTAATTGCCTAGAAATTTGTAAGTGAAAAACTCACTTTCTG
TCACTTCTGGAATAAACCCTGCCAATGTCCTTCCGGTTAATGGCAGAATG
CGCTTTCCTAAAGGTATTTCGGGGACCATAAGAGCCAAACCCGTTTCCAA
TTTTATATGCAGCCCCTCTTCTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_f08.b1 MSMg01no382_f08.b1 CHROMAT_FILE:
MSMg01no382_f08.b1 PHD_FILE: MSMg01no382_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:03 2005
         (470 letters)



>mm_chr1_11056792_11057661
          Length = 870

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctttccaaatctcaagacttttgctatcacaatctctggtctctcttaccatct 65
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaattctttccaaaactgaagacttttgctatcacaatctctggtctctcttaccatct 611

                                                                       
Query: 66  gtaaagatgttcttaaaggagttatgattaataactatcaaaggagcccagtgaaaaaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gtaaagatgttcttaaaggagttatgattaataactatcaaaggagcccagtgaaaaaca 551

                                                                       
Query: 126 cagataatttattgatcaaatatgagaacatagaatgtcctttgtaatttcaaagacaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cagataatttattgatcaaatatgagaacatagaatgtcctttgtaatttcaaagacaca 491

                                                                       
Query: 186 cagaatagtaagtactatttcatatagccagcagcacatgtatcaaatcacttgcctcaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagaatagtaagtactatttcatatagccagcagcacatgtatcaaatcacttgcctcaa 431

                                                                       
Query: 246 gagatgatatgagccacaacaagagtaaagttcagaaatctgagcgacatttacgggtga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagatgatatgagccacaacaagagtaaagttcagaaatctgagcgacatttacgggtga 371

                                                                       
Query: 306 tagattcataatgcggtactaaggaaatggctgtcgggaacaaagtttccatgaccatgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tagattcataatgcggtactaaggaaatggctgtcgggaacaaagtttccatgaccatgt 311

                                                                       
Query: 366 ttggcctgggatgacaatttctccagctggcagggggatctaattcttctgtgaagggaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttggcctgggatgacaatttctccagctggcagggggatctaattcttctgtgaagggaa 251

                                                        
Query: 426 actggcttgaagaagtggatatgaacatcacagcttccagccata 470
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 actggcttgaagaagtggatatgaacatcacagcttccagccata 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_f08.g1 MSMg01no382_f08.g1 CHROMAT_FILE:
MSMg01no382_f08.g1 PHD_FILE: MSMg01no382_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:03 2005
         (512 letters)



>mm_chr1_10861364_10862275
          Length = 912

 Score =  920 bits (476), Expect = 0.0
 Identities = 503/512 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatggataaataaagatgaaagaaaagaaagattattgctaggtaaataccacaagaaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatagataaataaagatgaaagaaaagaaagattattgctaggtaaataccacaagaaa 260

                                                                       
Query: 61  gcaacagaagatacaatgataactattaaatttccaagcaaaagctagcagaaagatgtt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gcaacagaagatacaatgataactattaaatttccaagcaagagctagcagaaagatgtt 320

                                                                       
Query: 121 gctgggccggtgccagcagcactatgcctgccagtacaattttcagagtctgttgactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgggccggtgccagcagcactatgcctgccagtacaattttcagagtctgttgactgc 380

                                                                       
Query: 181 aatcttgctgattggatgtatgtgtgcatatatctgatccttggcacgagaatcctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aatcttgctgattggatgtatgtgtgcatatatctgatccttggcacgagagtcctggac 440

                                                                       
Query: 241 aaaaataaaactgcactacttggaatattttggaatatttggaagtgtgcctaaattggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaataaaactgcactacttggaatattttggaatatttggaagtgtgcctaaattggt 500

                                                                       
Query: 301 gaacacaagagtccttattttgccatatggcatatagagatggccttcacatccccttca 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 gaacacaagagtccttattttgccatatggcatatagtgatggccttcacatccccttca 560

                                                                       
Query: 361 tgaaacagctttgaaaactgccaatgcgtgattgctattagattcagttaataagatctt 420
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgaaacagctttgaaaactgctaatgcgtgattgctattagattcggttaataagatctt 620

                                                                       
Query: 421 gcctccagaaaataatgggaagaatggttggcccttttatctcagaacatggaatgagat 480
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gcctccagaaaataatgggaaggatggttggccctttcatctcagaacatggaatgagat 680

                                           
Query: 481 aaatttcgagacaccctgctctaattttatgc 512
           ||||||||||||||||| ||||||||||||||
Sbjct: 681 aaatttcgagacacccttctctaattttatgc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |