Query= MSMg01no382_f13.b1 MSMg01no382_f13.b1 CHROMAT_FILE:
MSMg01no382_f13.b1 PHD_FILE: MSMg01no382_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:04 2005
(565 letters)
>mm_chr1_107324219_107325183
Length = 965
Score = 1038 bits (537), Expect = 0.0
Identities = 555/561 (98%)
Strand = Plus / Minus
Query: 1 gaaacatgggaaaaatccctctgcactcattttaaaatgttacccactgagcttagcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaaacatgggaaaaatccctctgcactcattttaaaatgttacccactgagcttagcaag 610
Query: 61 gacagctttaaattctcatcttttctactaagcattttgatgccaatgtctaataatgtt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gatagctttaaattctcatcttttctactaagcattttgatgccaatgtctaataatgtt 550
Query: 121 atgtacatcctgaccaaaactgagtcactgaaatcttaaaaagaacggaggatacctact 180
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 549 atgtgcatcctgaccaaaactgagtcactgagatcttaaaaagaacggaggatacctact 490
Query: 181 agcaggaccctcagggcagcatggcgaggagagaaaagcataataatgagtccatagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agcaggaccctcagggcagcatggcgaggagagaaaagcataataatgagtccatagcca 430
Query: 241 gggagaacctcaggctcctagctcactgggccaaattcccttctgcctcatctggtgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gggagaacctcaggctcctagctcactgggccaaattcccttctgcctcatctggtgcta 370
Query: 301 gtttcttttgtttaagagctttgcatttctgttccagctcaatttctataactgtgctta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 gtttcttttgtttaagagctttgcatttctgttccagctcaatttctataaccgtgcttg 310
Query: 361 tataaaagagaaatgcacaatgaagcaaacagcagagtggactgaggaagtccccgtgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tataaaagagaaatgcacaatgaagcaaacagcagagtggactgaggaagtccccgtgca 250
Query: 421 tacagtcagtgtgtaagtctgtaggtgacagggcatgggagctgtactggtttgattatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tacagtcagtgtgtaagtctgtaggtgacagggcatgggagctgtactggtttgattatt 190
Query: 481 tgttcccaggtggtagaactgttgaaggattaggaggtgtggccttattggagatggtgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgttcccaggtggtagaactgttgaaggattaggaggtgtggccttattggagatggtgt 130
Query: 541 gtcactgggggtggtctttga 561
|||||||||||||| ||||||
Sbjct: 129 gtcactgggggtgggctttga 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_f13.g1 MSMg01no382_f13.g1 CHROMAT_FILE:
MSMg01no382_f13.g1 PHD_FILE: MSMg01no382_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:04 2005
(541 letters)
>mm_chr1_107130170_107131111
Length = 942
Score = 988 bits (511), Expect = 0.0
Identities = 534/542 (98%), Gaps = 1/542 (0%)
Strand = Plus / Plus
Query: 1 ttaaggaagatttgttctccctcagctcacctccaacattcaagatgtgcagcgtcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggaagatttgttctccctcagctcacctccaacattcaagatgtgcagcgtcttca 260
Query: 61 taaactcggcttcctttcagcacttgtatagatttattcccaatccatcagcatcagcag 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 taaactcggcttcctttcagcacttgtatagatttattcccaatccgtcagcatcagcag 320
Query: 121 gacactatctgttgtttttcaccttctggaaagcactctatctcaaacactgatgggtga 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gacactatctgttgtttttcaccttctggaaagcactctatctcagacactgatgggtga 380
Query: 181 gacctgggctttttcaactgtctccagtccctcaagacttggacaccacattccctttac 240
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gtcctgggctttttcaactgtctccagttcctcaagacttggacaccacattccctttac 440
Query: 241 tgagccagagtaatgctactcaaggtgtaaggctgggttggttaatggtccatcttattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagccagagtaatgctactcaaggtgtaaggctgggttggttaatggtccatcttattt 500
Query: 301 gacaaattaaagcttggatttaggtattagtgtcaatactactgccttctcactagctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaaattaaagcttggatttaggtattagtgtcaatactactgccttctcactagctca 560
Query: 361 ctaatggtgttgggaaaaaaatgtaattgcttacaatgatagtatggtattgactacagt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaatggcgttgggaaaaaaatgtaattgcttacaatgatagtatggtattgactacagt 620
Query: 421 cttttttttt-cagaaactgaaaaaatactcctcaatatttgcaggtttctaatgaagtg 479
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 cttttttttttcagaaactgaaaaaatactcttcaatatttgcaggtttctaatgaagtg 680
Query: 480 ttaactaattttagaatgttcaaccatgggtctagtanaatcatttaaaagctttattgt 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 ttaactaattttagaatgttcaaccatgggtctagtaaaatcatttaaaagctttattgt 740
Query: 540 tt 541
||
Sbjct: 741 tt 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
