BAC Information

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BAC

Clone NameMSMg01-382I06
Chromosome1 (Build37)
Map Location 42,120,668 - 42,291,198
singlet/doubletdoublet
Overlap geneLOC383634, LOC666582
Upstream geneLOC100041441
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382I06.T7 (MSMg01no382_i06.b1)MSMg01-382I06.TJ (MSMg01no382_i06.g1)
ACCAG486401AG486402
length746758
length of high quality
(start - end)		664 (32 - 695)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no382_i06.b1 PHD_FILE: MSMg01no382_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:17 2005CHROMAT_FILE: MSMg01no382_i06.g1 PHD_FILE: MSMg01no382_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,120,668 - 42,121,328)(42,290,952 - 42,291,198)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAACAGC
TCATTCCAGACTCCTGTTTTTAGTTATCATCTATTTCCTTTCTATACTAA
TAGTTGTTCAGAATTTAACTTTTCACTTATCTGCAATAGCATTATTGGAA
AATGCAGTCCACTGTTTATGGTTCCATTGTTTGACATTAGAAAGAACCAT
TTTTATTTCACATAGGAACTTCTTAAGTTATTGAGGTGGGTTTTCAAAGT
TACTATATTTCCTCTTCAAATTTAACTTCACTATAAGTCAGCAACTGCAA
ATCTTTCCTATATATGAATCATTACAAGGTAAACAGACTTCTGCACATTT
TAATACTGTCTTCTCTCATTTGATGCCCACCATACCCTGTATTTGTGTAA
CATGATTCTCAATTCCTTTAGAGAAACCAGAGTTTGGTGATATCAAAACA
TAGCATATTTTATTGGAAGACACAGCATGGATGGGTTAGTTAATTAATCA
GTTCTTTTGAAATTCATTGGGTCAATTAGAAAGCTAACCATTTCTTGGTG
GTGTAAATAACTATTGTTTATTGATCCATAGTTAAACATTTCACAAAACT
GAAACAATTTAAAGTAAAAATGAGCATTGTTATTCCTCCAATGGAAATGT
GTAACTCAACAAGTTTTATTTACAACTTGACATTCTAACATCCTTTNGAA
ACATGACCCTATGTGCCTTACTCCTTAAACCCAAAGACCACAGGAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAGTAATCGATATATTTTCTAA
GTGCGTGTGCGCATGTCGGCTGTCACACACAGCATTCTGGACAACATATC
TTGTTACTCATGGAGCGTTTCCAAATCCTGATTACTTAAACAAAAGCAGA
TTTTTACCTCTGTAAGTCTTTACAAAGATTAAAAAAGAGAAAGACAGAGA
GACAAATGGTTATTTGGTTTCAATCTGGCCTTAATAATTTTCCTCTGCCT
ATTTTCCATTAAAAAGGAGGTAGTTATACAATCCAGCACAGAATATGGAA
TATATATATTTTTTTGCAATTCGTACCTTTGATATGGGATTGATTAGTTC
TGACCATTTTGCCTCCACTATGATACAAATTGCTGCGTGCCTCCCCTTAA
CTTTTAACTCAAAACCTTTGGTCATAAGCATTCCGCATTTTAGGGGGTTC
CCTTTCCGTTAAAAAAACCTCTGGTTAAGAAGGCACTGGAAAAAAATCCC
CCATTTGGCCCCAAAAAAACAAGATTTGGAAACATTTTTCTCCCTTTTTG
GGAGACCCCCTTTGAAAAAATTTACCGAAACCCTTTTGGTGGGTTAAAAA
AAAAAAAGGTTTAAAATATAGTTTAAATTCCCCAAAACCCTTTTTTAATG
GGGCGCCCTTGGTGTATTGTACTCCCCCCCCATCCCATGTTTAATATAAT
ATCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_i06.b1 MSMg01no382_i06.b1 CHROMAT_FILE:
MSMg01no382_i06.b1 PHD_FILE: MSMg01no382_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:17 2005
         (664 letters)



>mm_chr1_42120465_42121528
          Length = 1064

 Score = 1247 bits (645), Expect = 0.0
 Identities = 657/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggaacagctcattccagactcctgtttttagttatcatctatttcctttcta 63
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggaacagcacatttcagactcctgtttttagttatcatctatttcctttcta 263

                                                                       
Query: 64  tactaatagttgttcagaatttaacttttcacttatctgcaatagcattattggaaaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactaatagttgttcagaatttaacttttcacttatctgcaatagcattattggaaaatg 323

                                                                       
Query: 124 cagtccactgtttatggttccattgtttgacattagaaagaaccatttttatttcacata 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtacactgtttatggttccattgtttgacattagaaagaaccatttttatttcacata 383

                                                                       
Query: 184 ggaacttcttaagttattgaggtgggttttcaaagttactatatttcctcttcaaattta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaacttcttaagttattgaggtgggttttcaaagttactatatttcctcttcaaattta 443

                                                                       
Query: 244 acttcactataagtcagcaactgcaaatctttcctatatatgaatcattacaaggtaaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttcactataagtcagcaactgcaaatctttcctatatatgaatcattacaaggtaaac 503

                                                                       
Query: 304 agacttctgcacattttaatactgtcttctctcatttgatgcccaccataccctgtattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agacttctgcacattttaatactgtcttctctcatttgatgcccaccataccctgtattt 563

                                                                       
Query: 364 gtgtaacatgattctcaattcctttagagaaaccagagtttggtgatatcaaaacatagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgtaacatgattctcaattcctttagagaaaccagagtttggtgatatcaaaacatagc 623

                                                                       
Query: 424 atattttattggaagacacagcatggatgggttagttaattaatcagttcttttgaaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atattttattggaagacacagcatggatgggttagttaattaatcagttcttttgaaatt 683

                                                                       
Query: 484 cattgggtcaattagaaagctaaccatttcttggtggtgtaaataactattgtttattga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cattgggtcaattagaaagctaaccatttcttggtggtgtaaataactattgtttattga 743

                                                                       
Query: 544 tccatagttaaacatttcacaaaactgaaacaatttaaagtaaaaatgagcattgttatt 603
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 744 tccatagttaaacatttcacaaaactgaaacaatttacagtaaaaatgagcattgttatt 803

                                                                       
Query: 604 cctccaatggaaatgtgtaactcaacaagttttatttacaacttgacattctaacatcct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctccaatggaaatgtgtaactcaacaagttttatttacaacttgacattctaacatcct 863

            
Query: 664 t 664
           |
Sbjct: 864 t 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_i06.g1 MSMg01no382_i06.g1 CHROMAT_FILE:
MSMg01no382_i06.g1 PHD_FILE: MSMg01no382_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:17 2005
         (247 letters)



>mm_chr1_42290752_42291398
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagtaatcgatatattttctaagtgcgtgtgcgcatgtcggctgtcacacacagcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attagtaatcgatatattttctaagtgcgtgtgcgcatgtcggctgtcacacacagcatt 388

                                                                       
Query: 61  ctggacaacatatcttgttactcatggagcgtttccaaatcctgattacttaaacaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctggacaacatatcttgttactcatggagcgtttccaaatcctgattacttaaacaaaag 328

                                                                       
Query: 121 cagatttttacctctgtaagtctttacaaagattaaaaaagagaaagacagagagacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagatttttacctctgtaagtctttacaaagattaaaaaagagaaagacagagagacaaa 268

                                                                       
Query: 181 tggttatttggtttcaatctggccttaataattttcctctgcctattttccattaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 tggttatttggtttcaatctggccttaataattttcctctgtctattttccattaaaaag 208

                  
Query: 241 gaggtag 247
           |||||||
Sbjct: 207 gaggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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