BAC Information

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BAC

Clone NameMSMg01-382J01
Chromosome1 (Build37)
Map Location 135,664,787 - 135,665,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Downstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382J01.T7 (MSMg01no382_j01.b1)MSMg01-382J01.TJ (MSMg01no382_j01.g1)
ACCAG486439AG486440
length731769
length of high quality
(start - end)		548 (36 - 583)54 (89 - 142)
definitionCHROMAT_FILE: MSMg01no382_j01.b1 PHD_FILE: MSMg01no382_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:21 2005CHROMAT_FILE: MSMg01no382_j01.g1 PHD_FILE: MSMg01no382_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTC
TATACCTCGGGACACTGCTGGTTCTGAGATCCTCCATTTGGATGAGGGCG
ACAGAATTCATGTCAGCTTGCCTCCTCTTGGAGAGGTGACAAAGACGGCT
GAGGTTTCTAAAGATGGCAAAGGAGGATTCCGCCATCTTCAGAATCAAAG
ACTTGGGTACCATAGGAAACTAAGTATCACCGTGTCCTCTTACTTTCTCC
AAACACAGGGGCTGTCGTCAGCCAAGAGGTCAGTAAATCACAAGGACATC
ACTGGCAAATGCACCAGCAAGTTCTTTGCCTTTTCTGGAAAGATTCCTGC
TTTGCTGCCAACTACAGCAGTGGTTCTCAACCTGTGGGTCATGACCCCTC
TGGGAGTTTGAACAACACCTTTCACAAGGGTCGCCTAAGACCATCTGCAT
ACCAAATATTTACATTACATTTTTTTTTTCGAGACAGGGTTTCTCTGTAT
AGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT
CAGAGATCCACCTGCCTCTGCCTCCCGAGTGTTGGGATTAAAGGCGTGCG
CCACCATGCCCCGGTTCTACTTTACGATTCTTAACCGTAGTAAAATTACA
ATTATGAGGGTCAGCATAGCTTGAGGGACTGCTATAAAAGGTTGGGGTAC
CAGAAAAGGTTAATAATCTATTGATTCTTTA

ACTGACAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACAACATCCTTCGTGCATTCCACAAGCGTGCAGTGGGGCTGGAC
AAAGGATCCTTTCTCCCTTTATATACCCGTGTGTGTGTGTAAAAAAAAAA
AAAAAAAAGAAAAAGAGAGAGAAAGAAAAAAAAAAAAAAANNNNNNNNAA
AAAAAAAATAAAAAAAAAAAATAATAAAAAAAAAAATAAANAAANAATTA
TAATAAAATTAATAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAANTTTT
TAAATNTTATTNNTTTTAAAAAAAAAAAACATAAAATAAAAAAAAAAAAT
TTNAATAAATTAAAAAAAAAAAACAAAATTTAACTTAAAAAAAAAAAAAA
AAAACAACACAACATTACTAAAAAAAATAAAATATAAAAAAAAAAAAAAA
AAAAAAAAATAAATCAAAAAAAAAAAAAAAAAACAAATAAAAAAACTAAT
TAACAAAAAAAACAAAAAAAAAAACCNACTNCCAAACAAACAAAAAAATA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGAAA
ACAAAAAAACCACAAAACAAACATAACAAAAAAAATAAAAAAAAAAAAAA
AAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAACCATAATAAAAAAAAAA
ATATAAAAAATAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_j01.b1 MSMg01no382_j01.b1 CHROMAT_FILE:
MSMg01no382_j01.b1 PHD_FILE: MSMg01no382_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:21 2005
         (548 letters)



>mm_chr1_135664584_135665531
          Length = 948

 Score = 1006 bits (520), Expect = 0.0
 Identities = 539/548 (98%), Gaps = 5/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccttctatacctcgggacactgctggttctgagatcctccatttggatgaggg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccttctagacctcgggacactgctggttctgagatcctccatttggatgaggg 263

                                                                       
Query: 64  cgacagaattcatgtcagcttgcctcctcttggagaggtgacaaagacggctgaggtttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgacagaattcatgtcagcttgcctcctcttggagaggtgacaaagacggctgaggtttc 323

                                                                       
Query: 124 taaagatggcaaaggaggattccgccatcttcagaatcaaagacttgggtaccataggaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaagatggcaaaggaggattccgccatcttcagaatcaaagacttgggtaccataggaa 383

                                                                       
Query: 184 actaagtatcaccgtgtcctcttactttctccaaacacaggggctgtcgtcagccaagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actaagtatcaccgtgtcctcttactttctccaaacacaggggctgtcgtcagccaagag 443

                                                                       
Query: 244 gtcagtaaatcacaaggacatcactggcaaatgcaccagcaagttctttgccttttctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcagtaaatcacaaggacatcactggcaaatgcaccagcaagttctttgccttttctgg 503

                                                                       
Query: 304 aaagattcctgctttgctgccaactacagcagtggttctcaacctgtgggtcatgacccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 aaagattcctgctttgctgccaactacagcagtggttctcaacctgtgggtcatgaccca 563

                                                                       
Query: 364 tctgggagtttgaacaacacctttcacaagggtcgcctaagaccatctgcataccaaata 423
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tctgggagtttgaacaatacctttcacaagggtagcctaagaccatctgcataccaaata 623

                                                                       
Query: 424 tttacattaca-----ttttttttttcgagacagggtttctctgtatagtcctggctgtc 478
           |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttacattacaattttttttttttttcgagacagggtttctctgtatagtcctggctgtc 683

                                                                       
Query: 479 ctggaactcactttgtagaccaggctggcctcgaactcagagatccacctgcctctgcct 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctggaactcactttgtagaccaggctggcctcgaactcagagatccacctgcctctgcct 743

                   
Query: 539 cccgagtg 546
           ||||||||
Sbjct: 744 cccgagtg 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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