Query= MSMg01no382_l19.b1 MSMg01no382_l19.b1 CHROMAT_FILE:
MSMg01no382_l19.b1 PHD_FILE: MSMg01no382_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:34 2005
(515 letters)
>mm_chr1_139945939_139946853
Length = 915
Score = 609 bits (315), Expect = e-178
Identities = 347/373 (93%), Gaps = 24/373 (6%)
Strand = Plus / Minus
Query: 8 ggaattccaatttggatctcaaagaatgttccagatattattccactgagttctgccatt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggaattccaatttggatctcaaagaatgttccagatattattccactgagttctgccatt 315
Query: 68 gattcttgctgtgtgatgtcaaaactaaattttaagttttcctcctgcaaatactaactg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gattcttgctgtgtgatgtcaaaactaaattttaagttttcctcctgcaaatactaactg 255
Query: 128 tattttgttttctggatatttagtaatttcttttttattgtttaaat------------- 174
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tattttgttttctggatatttagtaatttcttttttattgtttaaatttattattattat 195
Query: 175 -----------ttattattattattattattattatttgggtttttttaaaacagggttt 223
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tattattattattattattattattattattattatttgggtttttttaaaacagggttt 135
Query: 224 ctctttgtggccctgcctgtcctggaactcactctgtagaccagggtgacctcgaactca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctctttgtggccctgcctgtcctggaactcactctgtagaccagggtgacctcgaactca 75
Query: 284 tatattcgcctgcctctgcctcccaagtgctgggattaaaggcatgcgccatcacacctg 343
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gatattcgcctgcctctgcttcccaagtgctgggattaaaggcatgcgccatcacacctg 15
Query: 344 gttattttttttt 356
|||||||||||||
Sbjct: 14 gttattttttttt 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_l19.g1 MSMg01no382_l19.g1 CHROMAT_FILE:
MSMg01no382_l19.g1 PHD_FILE: MSMg01no382_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:34 2005
(475 letters)
>mm_chr1_139814163_139815037
Length = 875
Score = 895 bits (463), Expect = 0.0
Identities = 472/475 (99%)
Strand = Plus / Plus
Query: 1 aggcactcattcacatgagttacttcaggtttcctgaaatgagatactagggttggagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcactcattcacatgagttacttcaggtttcctgaaatgagatactagggttggagta 260
Query: 61 tgaaatgtaatgttgttaattgaggaattaaaaataagtagccgtttcccctcgttagcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgaaatgtaatgttgttaattgaggaattaaaaataagtagccgtttccccttgttagcc 320
Query: 121 ctgtccttacagacaaaccaatcagtgtggtttcagactaaatgtaacgttatgcctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtccttacagacaaaccaatcagtgtggtttcagactaaatgtaacgttatgcctgtg 380
Query: 181 agtataaagcacacccgtagtgcacatgagaagaacgttcactagtcacccttgattctc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtataaagcacacctgtagtgcacatgagaagaacgttcactagtcacccttgattctc 440
Query: 241 aggagcctcctcaaagaaggaatggcaatgctcattccagcaactctcatagctgttctt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagcctcctcaaagaagggatggcaatgctcattccagcaactctcatagctgttctt 500
Query: 301 ccttgctaaggatccagtttctacaagaatatttaaaagtaaccaccgccaacaacaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgctaaggatccagtttctacaagaatatttaaaagtaaccaccgccaacaacaaaa 560
Query: 361 aggattgtgcttttctgtatgtagaacacaacacaataagttggaccagatcaagaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggattgtgcttttctgtatgtagaacacaacacaataagttggaccagatcaagaactt 620
Query: 421 tatagtggagttgcaattacttgcacatgggagacaacctgttgccgctcactag 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagtggagttgcaattacttgcacatgggagacaacctgttgccgctcactag 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
