BAC Information

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BAC

Clone NameMSMg01-382M07
Chromosome1 (Build37)
Map Location 156,293,487 - 156,478,890
singlet/doubletdoublet
Overlap geneCacna1e
Upstream gene1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382M07.T7 (MSMg01no382_m07.b1)MSMg01-382M07.TJ (MSMg01no382_m07.g1)
ACCAG486595AG486596
length735741
length of high quality
(start - end)		526 (36 - 561)447 (62 - 508)
definitionCHROMAT_FILE: MSMg01no382_m07.b1 PHD_FILE: MSMg01no382_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:36 2005CHROMAT_FILE: MSMg01no382_m07.g1 PHD_FILE: MSMg01no382_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,478,368 - 156,478,890)(156,293,487 - 156,293,933)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATT
ATTTCTGGGAGGCAGCAGGGAGGAGGAGGCAAACATGGTGAGGGCATAGT
CACTTCCTATCTGAGATGTCAAGGTTGTCTTGAGGCAATCTCACCAAGAC
TAGCCAAGGGACCTTAAGAAATTATCGTGCTGGCCCTGCAGTGGCTGGTG
TCACTTGTAGAGCTTTGAAAGTGATGAACTTCAATTAGATGTGTAGACTC
ACCTAAGTGATGTGATAAATGCATGGAAAGCCTACAAGGAGAAGTGTTGC
ATTTGAGGATCTAAGTGCGATCTGCCATTCCTCCGACCAGGGATCAGCTG
GGACTGAGATGCGCCAGAGTGGAGCAGATGAGCTGCTCATCACTCCCGCA
CTGGTCCTCTTGGAGATCATTACTTATTTCTACAACTATTGACTTTGTAG
ATATTCTGTATCAAGCACTATGCAGAAACACTAGCAAGATGGCACTGGGG
CGGGGAAGGGGTGCGATCCCTACTGGCATGGTTCTCTCTTTAAATTCCCA
TCTCTCCTGTTGNCTGGCCAGTGTAGCAATAGAGCCTACACCAAGCAACT
GTGATCTAGCTCTTGCCCGGAGTTTTGCTCATGAAGCAAGGAGGGAAGGA
AAGTAGTCATTGAAGGACCCCCTGAATCTTTCATCCACCAGTTTCTAAGT
CCCAAAACCCCTCTTCCCCCTAAAACCAACTGTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATGAGAGTTTGATACATTTAAGGCCATTTTTAGCTTAT
TTTCTGGGCTTTGGGAGTTTAGCTCACCGGAGAGTCTGGCCTTACAATGA
TACTGCAATTGTGTGGTTGCTGCTTCACAGCACTGGGTATAGTATGTCTG
GATCAATTAGTTTAACACTGCAGAGAAGGTGAGCAACACAACAGACTTGT
GGAATGATCAGAGCCATTTATGTCATTTCATGTCTGGCTTTGTTTGTTCA
TTAACAAAGATAGGAGCCAGTGATCCCCAGTTTAAAAGAAATAATGAAGG
CCACGGCCACATTCTTCGGGGGTGGACTGCTCCTGTCAAGCTGTTGCACA
TTCCTCTGTTCCCATGGGAACTTGCACTGAAGTTCACATTTGGAGCCCCA
GATGGGACACATGGGAGTGGTGATTGATAAGCCTAAGCCAGTGGCTTGCT
AGTGGGAGGGTGGTCAGGTAGATATGACACCATACAATGTCGTGATCTTT
CATCGTATGGACGAATGCTTGTTAAATACCTTTTACCTTTATTGACCAAT
TTTCCCTTTGTATATCTACCTTCACTATCTAATAATAACCTTTTCCTATT
TTTTTTGTGATCCCTTAATTAATTAATGGTTACTTCCTCCTTCTCTTTCC
CCCTACCCTTCTCCTTTCTACTCCTTTCTTTTCTTACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_m07.b1 MSMg01no382_m07.b1 CHROMAT_FILE:
MSMg01no382_m07.b1 PHD_FILE: MSMg01no382_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:36 2005
         (526 letters)



>mm_chr1_156478165_156479090
          Length = 926

 Score =  988 bits (511), Expect = 0.0
 Identities = 520/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttattatttctgggaggcagcagggaggaggaggcaaacatggtgagggcata 63
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattcttattagctatgggaggcagcagggaggaggaggcaaacatggtgagggcata 667

                                                                       
Query: 64  gtcacttcctatctgagatgtcaaggttgtcttgaggcaatctcaccaagactagccaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtcacttcctatctgagatgtcaaggttgtcttgaggcaatctcaccaagactagccaag 607

                                                                       
Query: 124 ggaccttaagaaattatcgtgctggccctgcagtggctggtgtcacttgtagagctttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaccttaagaaattatcgtgctggccctgcagtggctggtgtcacttgtagagctttga 547

                                                                       
Query: 184 aagtgatgaacttcaattagatgtgtagactcacctaagtgatgtgataaatgcatggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagtgatgaacttcaattagatgtgtagactcacctaagtgatgtgataaatgcatggaa 487

                                                                       
Query: 244 agcctacaaggagaagtgttgcatttgaggatctaagtgcgatctgccattcctccgacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agcctacaaggagaagtgttgcatttgaggatctaagtgcgatctgccattcctccgacc 427

                                                                       
Query: 304 agggatcagctgggactgagatgcgccagagtggagcagatgagctgctcatcactcccg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agggatcagctgggactgagatgcgccagagtggagcagatgagctgctcatcactcccg 367

                                                                       
Query: 364 cactggtcctcttggagatcattacttatttctacaactattgactttgtagatattctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cactggtcctcttggagatcattacttatttctacaactattgactttgtagatattctg 307

                                                                       
Query: 424 tatcaagcactatgcagaaacactagcaagatggcactggggcggggaaggggtgcgatc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tatcaagcactatgcagaaacactagcaagatggcactggggcggggaaggggtgcgatc 247

                                                      
Query: 484 cctactggcatggttctctctttaaattcccatctctcctgtt 526
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctactggcatggttctctctttaaattcccatctctcctgtt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_m07.g1 MSMg01no382_m07.g1 CHROMAT_FILE:
MSMg01no382_m07.g1 PHD_FILE: MSMg01no382_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:36 2005
         (447 letters)



>mm_chr1_156293287_156294133
          Length = 847

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgagagtttgatacatttaaggccatttttagcttattttctgggctttgggagttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagagtttgatacatttaaggccatttttagcttattttctgggctttgggagttta 260

                                                                       
Query: 61  gctcaccggagagtctggccttacaatgatactgcaattgtgtggttgctgcttcacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaccggagagtctggccttacaatgatactgcaattgtgtggttgctgcttcacagc 320

                                                                       
Query: 121 actgggtatagtatgtctggatcaattagtttaacactgcagagaaggtgagcaacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgggtatagtatgtctggatcaattagtttaacactgcagagaaggtgagcaacacaa 380

                                                                       
Query: 181 cagacttgtggaatgatcagagccatttatgtcatttcatgtctggctttgtttgttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacttgtggaatgatcagagccatttatgtcatttcatgtctggctttgtttgttcat 440

                                                                       
Query: 241 taacaaagataggagccagtgatccccagtttaaaagaaataatgaaggccacggccaca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacaaagagaggagccagtgatccccagtttaaaagaaataatgaaggccacggccaca 500

                                                                       
Query: 301 ttcttcgggggtggactgctcctgtcaagctgttgcacattcctctgttcccatgggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttcgggggtggactgctcctgtcaagctgttgcacattcctctgttcccatgggaac 560

                                                                       
Query: 361 ttgcactgaagttcacatttggagccccagatgggacacatgggagtggtgattgataag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcactgaagttcacatttggagccccagatgggacacatgggagtggtgattgataag 620

                                      
Query: 421 cctaagccagtggcttgctagtgggag 447
           |||||||||||||||||||||||||||
Sbjct: 621 cctaagccagtggcttgctagtgggag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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