Query= MSMg01no382_m10.b1 MSMg01no382_m10.b1 CHROMAT_FILE:
MSMg01no382_m10.b1 PHD_FILE: MSMg01no382_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:37 2005
(604 letters)
>mm_chr1_61856379_61857382
Length = 1004
Score = 1137 bits (588), Expect = 0.0
Identities = 600/604 (99%)
Strand = Plus / Minus
Query: 1 tccccaagaaatcagagtaaaaattattaggatgaattctaataattaccatgatgccca 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 804 tccccaagaaatcagagtaaaaattattaggatgaattctaataactaccatgatgccca 745
Query: 61 ctgttacattatattttctttctgaataaagtagacgctatacacatggtgccatcccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgttacattatattttctttctgaataaagtagacgctatacacatggtgccatcccca 685
Query: 121 tgagtacttgacgtcataaatcagagctgacttcagatcagagtgtttgtggaacctaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagtacttgacgtcataaatcagagctgacttcagatcagagtgtttgtggaacctaat 625
Query: 181 ctaatccaataagcaacttaaaaacacttttcaagtgctggtggagaagtgggcgcagaa 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 624 ctaatccaataagcaacttaaaaacactttccaagtgctggtggagaagtgggtgcagaa 565
Query: 241 gcactttccaagtgctggtggtctggaggagggaactggccacatttcagtgtagagggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcactttccaagtgctggtggtctggaggagggaactggccacatttcagtgtagagggt 505
Query: 301 ggccctggacaacagtcaatgaagatatagtgacatcagatctactcctctagcacgctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggccctggacaacagtcaatgaagatatagtgacatcagatctactcctctagcacgctt 445
Query: 361 acctctacaaagctggcctcttctgaagtctatcaagaagagcccagcttgacgaaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctctacaaagctggcctcttctgaagtctatcaagaagagcccagcttgacgaaaatt 385
Query: 421 tttggccctgcacagtccaaatacaaattcagttcaatctgcccagtctgctaacctcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttggccctgcacagtccaaatacaaattcagttcaatctgcccagtctgctaacctcca 325
Query: 481 ggactctgcaagaaagggcgtcatttcttagaagctaagcttatggaaataccttactca 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggactctgcaagaaagggcatcatttcttagaagctaagcttatggaaataccttactca 265
Query: 541 gcaatgtaaacctaacaaactagtctatacccttatcttattgtgtctacataaaatata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaatgtaaacctaacaaactagtctatacccttatcttattgtgtctacataaaatata 205
Query: 601 agaa 604
||||
Sbjct: 204 agaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_m10.g1 MSMg01no382_m10.g1 CHROMAT_FILE:
MSMg01no382_m10.g1 PHD_FILE: MSMg01no382_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:37 2005
(532 letters)
>mm_chr1_61688161_61689091
Length = 931
Score = 959 bits (496), Expect = 0.0
Identities = 523/534 (97%), Gaps = 5/534 (0%)
Strand = Plus / Plus
Query: 1 actttctacaagccaggaagagaaatttaaagagatgcaatggaagagaaacctggtggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttctacaagccaggaagagaaatttaaagagatgcaatggaagagaaacctggtgga 260
Query: 61 gacgtgaatgtttctcccagagttctgaataatctagatgggagaaaggcttcaagacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacgtgaatgtttctcccagagttctgaataatctagatgggagaaaggcttcaagacag 320
Query: 121 atagaagttgtagtttccaagggccgaagtgagtggagcccaaggaggtccttctagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaagttgtagtttccaagggccgaagtgagtggagcccaaggaggtccttctagatg 380
Query: 181 ttgtagccagcattacagaagggacaccaaagcaagctggaatttgtggtatgttggaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtagccagcattacagaagggacaccaaagcaagctggaatttgtggtatgttggaac 440
Query: 241 cagctgagtc--tttcttaagataaggttagaagtaggtgagatgctgaaggaacaggag 298
|||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 cagctgagtcaa---cataagataaggctagaagtaggtgagatgctgaaggaacaggag 497
Query: 299 gagctttgggggaaggctttaatttgctctgaacttgggagcattgagtttcctgtttct 358
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 498 gagctttgggggaaggctttaatttgctctgaactcgggagcgttgagtttcctgtttct 557
Query: 359 actgggtgactcccacgctggaggagaagttaacagtggggatagaattatgggatggct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actgggtgactcccacgctggaggagaagttaacagtggggatagaattatgggatggct 617
Query: 419 tatctttggatcctggtactatatcagtgtcttgggtactaaatccaatttagtgaagta 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 618 tatctttggatcctggtactatatcagtgtcttgggcactaaatccaatttagtgaagta 677
Query: 479 gtttgtagaggagattgtctccttaagcagtcaaggtgtggatcagtgagtaat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtttgtagaggagattgtctccttaagcagtcaaggtgtggatcagtgagtaat 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
