CGCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCTTTACCTAT
TCTTTTGTTGTCTCATTTTGGTTTTTTTTTTTTGCAGTACTGGGGATCAA
TTCTGGGGATTCTCTTGAGAATGACTTTTGGAGAAACTTTCATATCTTGT
CTCTGTTTTTTCTAAACAGTGTGTGAGCATGTTCGCTGCTTATTACTTCG
TGGCATTTGTAGTTTAGTTTTGACACCTTGGCACTTTTGTATTTCTGACT
AATTTGCTGCATTTTCTAGTTGGATCAGTGCATCACATGTGAAACTGCAG
TATTTGAATTTTCCGTCTGTGAAATAATTTAGTTCCAACTCAGATTTTAT
GGGGAGCTCATTTCAGATTCCACATGAAACCAGGGTGTAGTGGTGTGTGT
TTTTAACTCCAGAATTAGGGAAATATAGACAGTTGGATCCCCGGAGATGA
CTGGCCAGCTAATCTTGGCTGAACTAATGATATCCGGGTTCATTGAGAGA
CCCCATCTTCAAACATAACGTGAGGAGCAACTGGACTCCTTGCCCATACA
TATGCTATGCCCTTACCCACTAGCAAGCATGTGTATATACATATACAGCC
TCCTTAAGTTAAAAATACTATTACCTGTCTATTCTTATACGGTACCACTT
TATAAATTTACGTTTCTTAAATAATAAACCCCTTCTATGATTTTTCTGGT
ATCACAAATTTTTGAATATCTTTTTTGGTCTGTTTTTTTAGAATTTCTTA
CTTCTCTAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGGCCATTTAGATGTTTCAGAAATTCAAACCACAGTTAG
AAACCTGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGA
ATGTCTGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGA
AATTATTTAAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATG
CATATATGCATCATGTGTGTGCAGTAACCCAGGAGATCAGGAGAGGACAT
TGGATCCCATAGGACTGCAGTTATATATGGTTGTACTGTAGATGCTGGGA
ATTGAACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGG
TATCTCTCCTGTACCACCAGAGTATTCCTAAGGGATAAGAGGACCATGTG
ATGACGGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTT
CCTGCCTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAG
AGGGCGCTGCTGAATGAAAAGGTGTAGGTGGAACTAAAAACTTCCTCCAC
AGCGCCCTTTCCATATATGTGACTCTTTTTGAGCCCTTCTTAAAGATGTA
TTTTCCCTTTTTTTCCCCCATTTACTTAACCTTGCTCCAACTTTTTTTTT
CTCCTCCCTTTTTTTATTGGCTCTCCCTTTTTTTCTCCCCCTTTTACCT

Query= MSMg01no382_n06.b1 MSMg01no382_n06.b1 CHROMAT_FILE:
MSMg01no382_n06.b1 PHD_FILE: MSMg01no382_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:41 2005
         (421 letters)



>mm_chr1_85260455_85261274
          Length = 820

 Score =  739 bits (382), Expect = 0.0
 Identities = 406/414 (98%), Gaps = 1/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcctttacctattcttttgttgtctcattttggttttttttttttgcagtactggg 67
           ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 620 gaattcctttacctatttttttgttgtctcatttt-gtttttcttttttgcagtactggg 562

                                                                       
Query: 68  gatcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctct 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctct 502

                                                                       
Query: 128 gttttttctaaacagtgtgtgagcatgttcgctgcttattacttcgtggcatttgtagtt 187
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gttttttctaaacagtgtgtgagcatgttcgctgcttattacttcatggcatttgtagtt 442

                                                                       
Query: 188 tagttttgacaccttggcacttttgtatttctgactaatttgctgcattttctagttgga 247
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttttgacactttggcactcttgtatttctgactaatttgctgcattttctagttgga 382

                                                                       
Query: 248 tcagtgcatcacatgtgaaactgcagtatttgaattttccgtctgtgaaataatttagtt 307
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcagtgcatcacatgtgaaactgcagtatttgaatttaccgtctgtgaaataatttagtt 322

                                                                       
Query: 308 ccaactcagattttatggggagctcatttcagattccacatgaaaccagggtgtagtggt 367
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaactcagattttatggggagttcatttcagattccacatgaaaccagggtgtagtggt 262

                                                                 
Query: 368 gtgtgtttttaactccagaattagggaaatatagacagttggatccccggagat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgtttttaactccagaattagggaaatatagacagttggatccccggagat 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space:   334132
Effective search space used:   334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)