BAC Information

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BAC

Clone NameMSMg01-383B21
Chromosome1 (Build37)
Map Location 21,636,032 - 21,636,454
singlet/doubletsinglet
Overlap geneKcnq5
Upstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383B21.T7 (MSMg01no383_b21.b1)MSMg01-383B21.TJ (MSMg01no383_b21.g1)
ACCAG486861AG486862
length770774
length of high quality
(start - end)		432 (44 - 475)424 (70 - 493)
definitionCHROMAT_FILE: MSMg01no383_b21.b1 PHD_FILE: MSMg01no383_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:04 2005CHROMAT_FILE: MSMg01no383_b21.g1 PHD_FILE: MSMg01no383_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATGTTTTCTTGTTATTGTTGTTTTCCAAAGATGCCACTGAGTTT
GTTTTCTGTTGGCCATCAACTGCTGAGCGTACAGCCTAACCTTAAGAGTA
ATTTGTTTCCTCAGAGACTCCCTGGGAGAAAACTAAAATTTCATTTTCAA
GTGGTTATCAATTTGAGATGGCTTTTGGGCTAGGGATGCAACATGTACCC
ACTATATTTTCAGCTCTAGGACCAGTTGGGGAACTGGTGCAGTCCCATGC
AGGCCTGTGTATTTCCCCTAAGTTTCTATGCATTTTTAATGTGTGTTGAT
CATGTTGATTTAGAGGACATGGTTCTATTGATGTCTTCCATCCCACCTGG
CTATTATACTATTTTGGCCTCCACTTCTACAAAATTCTCTGAGCCCTGGG
GGGAAGAATTACATAGAGACATCTCATTGAGTGTGCCAAGGTCTCTCAAT
CTCTTCATGATATCTGGCTATAGGTCTCTGTATTTATCCCCATCTGCTAC
AGGAGGAAGCTTCTCTGATGATGTCTGAGCAAGGCCTGATCTATGTGTAC
CAAGGAAGGGCTTAAAAGACTGGTGGGCCCACCTTGTTGGGGGGAATGGT
TGTTGTTTTTTAAAGGGGAATTTGGGGCTAGCCGCCCCGCGGGGGTGCGC
CTGGGGGGGCGGGGTGGGATGCGGCGGGCGGGGGCGCCGGTCGATGGGGG
CGGTGGGGCGTGCTGTGTGA

GAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGATGTTCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATATTTCCTTTT
CTTAAAGCAGACAAATTACTGAGAAATGAAATTAAGTGATTTGTGTGAAT
CATCTTTCCTATACTGACCCACATAGTTTTCTTGACACATTCACTAATGC
TTTCTCTATTACATATGGGCATACTGACTTACAGCGGAACGTCTCCCAGT
TTCCTGGTCACATCTACCCTGGCTTCCCAGTGGTCCAAGAATCATTCCAG
TAGTATCTGGATATGATTTGTATCACTTCTATTGGGGTGTAAGCTAGGGA
GAAACACTGCAGTAAGATGATATTCAGGCAAGATTTGGTGACACTATCCT
GTATATGAAAATTAATATCAGAGCTACGGAAAAGTTTCCTGTTAAAACCT
TAATAATTTGACTNAAGTGATAATAACCATTTCAAAACTGTGTAACCCAT
TTATATAGATAAAAAGGTTTCTCTGCTTCCGAAAGTCAATTATTAAGAAA
TCTTTGGGGGAAAGAAGAAAGGAAAGGNNCNNATTGTTTCCCCATTTTTT
TTTCTTCTGGTCCCTCCGGGTGAAATTTGGGGAAAATCCAAGAACCCAAA
GGGGGCCGGTTTCAAGGCTTTGTAGGGGGGATATCACCTTCCTTGTTTGA
AGAAAAAATAAATACGGAGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_b21.g1 MSMg01no383_b21.g1 CHROMAT_FILE:
MSMg01no383_b21.g1 PHD_FILE: MSMg01no383_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:04 2005
         (424 letters)



>mm_chr1_21635832_21636654
          Length = 823

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/424 (99%), Gaps = 1/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgttcctcaacagaggaatggatacagaaaatgtggtacatttacacaatggagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgttcctcaacagaggaatggatacagaaaatgtggtacatttacacaatggagtac 260

                                                                       
Query: 61  tactcagctatatttccttttcttaaagcagacaaattactgagaaatgaaattaagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcagctatatttccttttcttaaagcagacaaattactgagaaatgaaattaagtga 320

                                                                       
Query: 121 tttgtgtgaatcatctttcctatactgacccacatagttttcttgacacattcactaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgtgaatcatctttcctatactgacccacatagttttcttgacacattcactaatg 380

                                                                       
Query: 181 ctttctctattacatatgggcatactgacttacagcggaacgtctcccagtttcctggtc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttctctat-acatatgggcatactgacttacagcggaacgtctcccagtttcctggtc 439

                                                                       
Query: 241 acatctaccctggcttcccagtggtccaagaatcattccagtagtatctggatatgattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatctaccctggcttcccagtggtccaagaatcattccagtagtatctggatatgattt 499

                                                                       
Query: 301 gtatcacttctattggggtgtaagctagggagaaacactgcagtaagatgatattcaggc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 gtatcacttctattggggtgtaagctagggagaaacactgcattaagatgatattcaggc 559

                                                                       
Query: 361 aagatttggtgacactatcctgtatatgaaaattaatatcagagctacggaaaagtttcc 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagatttggtgatactatcctgtatatgaaaattaatatcagagctacggaaaagtttcc 619

               
Query: 421 tgtt 424
           ||||
Sbjct: 620 tgtt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 823
Length adjustment: 9
Effective length of query: 415
Effective length of database: 814
Effective search space:   337810
Effective search space used:   337810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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