BAC Information

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BAC

Clone NameMSMg01-383C21
Chromosome1 (Build37)
Map Location 69,974,100 - 69,974,475
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383C21.T7 (MSMg01no383_c21.b1)MSMg01-383C21.TJ (MSMg01no383_c21.g1)
ACCAG486909AG486910
length768756
length of high quality
(start - end)
483 (35 - 517)372 (70 - 441)
definitionCHROMAT_FILE: MSMg01no383_c21.b1 PHD_FILE: MSMg01no383_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:10 2005CHROMAT_FILE: MSMg01no383_c21.g1 PHD_FILE: MSMg01no383_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGGCGCTATACGACTCACTATATTCCGAGGATCCGCGGAATTCTCACC
TGAGTACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACA
CCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTANCCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGGAACATATTCTCAAAGGAACTCCCCC
ATATGGACTCCCTGAAAAAGGGATATTAACCCCAACCCTAGGTACCCCCG
AAATAAAAACCATTTCCTAACCCATGAAATCCCGAAAAATGAATTCTGAA
AGGGGGGCCCATTCCCCCCCCTTAAAAGGGAACAAAAACCCTTGGAGAGA
GTACTAAAAAAAATTTGG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGCTTTAAAGACTTTTGCTTCTATCAGAA
GCCATTGCCAGTTTCTTGGTCAAGTTATGTCAATAGCAGGAATATCTCAG
TCCCCTAAGATGACATATGTAGTACAGGAAAATGAACAAATTTGAAATTA
ATATCTTCATTAAACTTTAGAAAGGTCTAAATCAAATAGGGTTTTTTTTT
GCACTCATTACTTATTTTAAAAAGAACTCTATTTACATTCTTAATTCATA
ATATACGAAAGAACTGGAACCTTATCACATTTGTTATCACAGGAGATCAT
TTTTGTTAATCACATGATAGTTCAGACAAATGGAAAAAATGATACCAAAG
CTCTCTAATTTCAATATATTTGTGTTTTGTTTGTTTGTTTGTTTGTTTGG
GGNNGTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTNTNTTTTTTTTTT
TTTTNNTNTNTTTNTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
NTNTTTTTTTTTTTTTTNTTTTTTATTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_c21.g1 MSMg01no383_c21.g1 CHROMAT_FILE:
MSMg01no383_c21.g1 PHD_FILE: MSMg01no383_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:10 2005
         (372 letters)



>mm_chr1_69973900_69974675
          Length = 776

 Score =  677 bits (350), Expect = 0.0
 Identities = 368/376 (97%), Gaps = 4/376 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgctttaaagacttttgcttctatcagaagccattgccagtttcttggtcaagttatg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agtgttttaaagacttttgcttctatcagaagccattgccagtttcttggtcaagttatg 517

                                                                       
Query: 61  tcaatagcaggaatatctcagtcccctaagatgacatatgtagtacaggaaaatgaacaa 120
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 516 tcactagcaggaatatctcagtcccctaagatgacatatatagtacaggaaaatgaacaa 457

                                                                       
Query: 121 atttgaaattaatatcttcattaaactttagaaaggtctaaatcaaataggg----tttt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 456 atttgaaattaatatcttcattaaactttagaaaggtctaaatcaaatagggtttttttt 397

                                                                       
Query: 177 tttttgcactcattacttattttaaaaagaactctatttacattcttaattcataatata 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttttgcactcattacttattttaaaaagaactctatttacattcttaattcataatata 337

                                                                       
Query: 237 cgaaagaactggaaccttatcacatttgttatcacaggagatcatttttgttaatcacat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cgaaagaactggaaccttatcacatttgttatcacaggagatcatttttgttaatcacat 277

                                                                       
Query: 297 gatagttcagacaaatggaaaaaatgataccaaagctctctaatttcaatatatttgtgt 356
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 276 gatagttcagacaaatggaaaaaatgataccaaagctctttaatttcaatatatttgtgt 217

                           
Query: 357 tttgtttgtttgtttg 372
           ||||||||||||||||
Sbjct: 216 tttgtttgtttgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 776
Length adjustment: 9
Effective length of query: 363
Effective length of database: 767
Effective search space:   278421
Effective search space used:   278421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)