BAC Information

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BAC

Clone NameMSMg01-383F10
Chromosome1 (Build37)
Map Location 146,258,930 - 146,259,339
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456
Downstream geneRgs21, Rgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383F10.T7 (MSMg01no383_f10.b1)MSMg01-383F10.TJ (MSMg01no383_f10.g1)
ACCAG487031AG487032
length782771
length of high quality
(start - end)		530 (39 - 568)470 (67 - 536)
definitionCHROMAT_FILE: MSMg01no383_f10.b1 PHD_FILE: MSMg01no383_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:22 2005CHROMAT_FILE: MSMg01no383_f10.g1 PHD_FILE: MSMg01no383_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACCTGAGGAATACCGAATGGCAAAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAATCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAGTTCAGGTGACAGCAGATGCTG
GCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTCCCTCAGAAAATTG
GACATAGTACTATGGGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAAGATGAGTTGATTTTCAAATGGTTGATGGTGATTTCCATTTACTATC
AAAAGGTAAAAGAGAAAGCTGTAGGCATGCTTATTCTTCTGCAGGCAGAA
AATAACAAAAGAGAGTGCAGTGTGCTTTGCAAATGCCCCAAAGAAGAGAG
AAAATTTAAGTTCAGAAAGAATGAAGCTCACAACTATAAGGAGAACAAAT
AGCTGAACGAGATTACCAAGAGAGGAAGAAGTGCNAACAAAAGCCAGGAT
CACCAAGGCCCACCCCCACCCCCCCATACAATCCCACTCTCTGTTTCATA
AAAGAAAAACAAGTGGATGACCAGAAAAAAAAAAAATCCTATTATCTTTT
AAAATACATTTGTTGGCTTGAGAAAAACCCGCCCCCCTGAATCCAAAATG
GTTAAAGGGTTCTAATGGAGTGGAAAAAAAAA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAGTTCAGGGTTGGCTTCAAGGACTTTCTAGGA
CATTGGAACACTGGTGGAGGCTAAGCTATATGTCAAAATCAATCCTTAAA
GTCACTCATAATAAAGCAATATTGAAAGGGAGCACACAGATCCATACACC
AGACTAATATGGGGACAGGTTTTGAGTGTATGTGCTATGGGAATGCCAAG
GTTCCAGGAGGCTAAGTTTCTATGAAACTCTTTGCCTCGTGACTGCTTCC
AGGCTTTTAGGCCTATCAAGCAGACTTCACTGGAGTGGATGTAGCACCTG
TGTGCATCAGTCATGCTGTGGTTAAAAGGCCTTGGTTTTTGGTGTTCTTC
CATGCCATACTCTGGCTGTTACCCTCTTTCCATCTCCTCATCCACAGAGT
TCCATGAGCCCTCCCTCAGGGGCAGCATTTGATGGAGACATCACATGTAC
TGCTGAGTGTTCCAAGGCCTTTCAGTCTTTGAATGTGAGTTTTTCAGTTT
GCATGTATATATATCATCTGTGTGCTTAGTACCCATGGTGATTTGCAGAG
GGCATTGAATACCCTGGAAATGGAGCTGTGGATGGTTATGAGTCACCCCC
TGAGTCTTAAAAACTGGATAACCTTCCTTCCGGCCCCCCGGTTGGGATTT
ATTATAAATTGGATTCCAATTGGGGATTAATGGGTTACGCCCTCTATTGA
GACAGAAAAACTCTAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_f10.b1 MSMg01no383_f10.b1 CHROMAT_FILE:
MSMg01no383_f10.b1 PHD_FILE: MSMg01no383_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:22 2005
         (530 letters)



>mm_chr1_146258410_146259339
          Length = 930

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 121 cagaatggctaagatcaaaagttcaggtgacagcagatgctggcaaggatgtggagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 cagaatggctaagatcaaaagttcaggtgacagcagatgctggcaaggatgtggagaaag 871

                                                                       
Query: 181 aggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagt 811

                                                                       
Query: 241 ctggcggtccctcagaaaattggacatagtactatgggaggatccagcaatacctctcct 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 810 ctggcggtccctcagaaaattggacatagtactacgggaggatccagcaatacctctcct 751

                                                                       
Query: 301 gggcatatatccagaagatgagttgattttcaaatggttgatggtgatttccatttacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gggcatatatccagaagatgagttgattttcaaatggttgatggtgatttccatttacta 691

                                                                       
Query: 361 tcaaaaggtaaaagagaaagctgtaggcatgcttattcttctgcaggcagaaaataacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tcaaaaggtaaaagagaaagctgtaggcatgcttattcttctgcaggcagaaaataacaa 631

                                                                       
Query: 421 aagagagtgcagtgtgctttgcaaatgccccaaagaagagagaaaatttaagttcagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aagagagtgcagtgtgctttgcaaatgccccaaagaagagagaaaatttaagttcagaaa 571

                                                             
Query: 481 gaatgaagctcacaactataaggagaacaaatagctgaacgagattacca 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaatgaagctcacaactataaggagaacaaatagctgaacgagattacca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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