Query= MSMg01no383_h04.b1 MSMg01no383_h04.b1 CHROMAT_FILE:
MSMg01no383_h04.b1 PHD_FILE: MSMg01no383_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:30 2005
(461 letters)
>mm_chr1_42296304_42297164
Length = 861
Score = 868 bits (449), Expect = 0.0
Identities = 457/461 (99%), Gaps = 4/461 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgtgatgaaagttgatttctggagataagaaatgaattttagtcttttatga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtgatgaaagttgatttctggagataagaaatgaattttagtcttttatga 264
Query: 65 gcatttttaacttcttttctttgcaactgtacaatttcctttatgagaacagaagaacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatttttaacttcttttctttgcaactgtacaatttcctttatgagaacagaagaacac 324
Query: 125 agatttttttcaccatcaccacatcctctccttcttttagacaagagctgggattgtgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatttttttcaccatcaccacatcctctccttcttttagacaagagctgggattgtgtt 384
Query: 185 cttttaaagagctactcaagagcccacttccatttccagttctagacaacccaccttact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttttaaagagctactcaagagcccacttccatttccagttctagacaacccaccttact 444
Query: 245 tccttcagtcttcaagaaagatgatgtttgaatatcttgaatattctagtcttttctgta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttcagtcttcaagaaagatgatgtttgaatatcttgaatattctagtcttttctgta 504
Query: 305 gacacctcttttccctaaatgttattccctatagttaagaccaatgcaatctttccctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacacctcttttccctaaatgttattccctatagttaagaccaatgcaatctttccctct 564
Query: 365 cctatctctacacaag-c---ctctctctctctctctctctctctctctctctctctctc 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctatctctacacaagtctctctctctctctctctctctctctctctctctctctctctc 624
Query: 421 tctctctcctctctcccagaagttccaagaacaaatattct 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctctctcctctctcccagaagttccaagaacaaatattct 665
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 391 tctctctctctctctctctctctctctctctctctctc 428
||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctctctctctctctctctctctctctctctctc 155
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 389 tctctctctctctctctctctctctctctctctctctc 426
||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctctctctctctctctctctctctctctctctc 155
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 387 tctctctctctctctctctctctctctctctctctctc 424
||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctctctctctctctctctctctctctctctctc 155
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 385 tctctctctctctctctctctctctctctctctctctc 422
||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctctctctctctctctctctctctctctctctc 155
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 383 tctctctctctctctctctctctctctctctctctctc 420
||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctctctctctctctctctctctctctctctctc 155
Score = 72.3 bits (37), Expect = 7e-17
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 382 ctctctctctctctctctctctctctctctctctctc 418
|||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctctctctctctctctctctctctctctctctctctc 155
Score = 68.4 bits (35), Expect = 1e-15
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 397 tctctctctctctctctctctctctctctctcctctctc 435
||||||||||||||||||||||||||||||| |||||||
Sbjct: 192 tctctctctctctctctctctctctctctct-ctctctc 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_h04.g1 MSMg01no383_h04.g1 CHROMAT_FILE:
MSMg01no383_h04.g1 PHD_FILE: MSMg01no383_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:30 2005
(504 letters)
>mm_chr1_42387540_42388443
Length = 904
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%)
Strand = Plus / Minus
Query: 1 aagggctgagaaatagtcccagttatgatgacacaaatataaattgactatagatgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aagggctgagaaatagtcccagttatgatgacacaaatataaattgactatagatgaaat 572
Query: 61 aaaaaaagtgtagaataatcctgaaagattaagacaaccttatttaagtaaaagatactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aaaaaaagtgtagaataatcctgaaagattaagacaaccttatttaagtaaaagatactg 512
Query: 121 tgaagagacccaatttaacccaggagagactagaatggctggttcaaagcagagttttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgaagagacccaatttaacccaggagagactagaatggctggttcaaagcagagttttgc 452
Query: 181 ttatatttatggataaattgggtgactgaaggaacaattctaataagaaaggcacatctt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 451 ttatatttatggataaattgggtgactgaaggaacaattccaataagaaaggcacatctt 392
Query: 241 caagtagggatatttaaatatgctcatgtaaaatgttgtaactaaaaggtaattcatata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 391 caagtagggatatttaaatatgctcatgtaaaatgttgtaactaaaaggtaattcacata 332
Query: 301 aaattggatgaggcaaaccacagtgaacacacgcatgaagaaattatagggcaaaaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaattggatgaggcaaaccacagtgaacacacgcatgaagaaattatagggcaaaaagtg 272
Query: 361 ctaagaacttaacctatatgcatttatgtatttctttctgtgtattgatgtatttgttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctaagaacttaacctatatgcatttatgtatttctttctgtgtattgatgtatttgttca 212
Query: 421 cctagctattcgtatacatatatacatatacatatattaatatacatattcatatatgct 480
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 211 cctagctattcatatacatatatacatacacatatataaatatacatattcatatatgct 152
Query: 481 cacttaagcacatacatagaatat 504
||||||||||||||||||||||||
Sbjct: 151 cacttaagcacatacatagaatat 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
