Query= MSMg01no383_j12.b1 MSMg01no383_j12.b1 CHROMAT_FILE:
MSMg01no383_j12.b1 PHD_FILE: MSMg01no383_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:40 2005
(584 letters)
>mm_chr1_83951627_83952609
Length = 983
Score = 1054 bits (545), Expect = 0.0
Identities = 572/581 (98%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 4 ttattatctatgtgatgactgcccaggcaaataagataggttaggaaaaatgattgtttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttattatctatgtgatgactgcccaggcaaataagataggttaggaaaaatgattgtttt 263
Query: 64 gcatgtcaaggttcaggaccatgtgtgtcaattgtcattagtatcaagtctttgtcattt 123
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 gcgtgtcaaggttcaggaccatgtgtgtcaattgtcattagtatcaaatctttgtcattt 323
Query: 124 ttctctctcccatcttatggaaatttaggcagcactaagtccaagaaatacattgagata 183
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 ttctctctcccatcttatggagatttaggcagcactacgtccaagaaatacattgagata 383
Query: 184 aagaattagacattaggttttcttcctgtgtggtccgatttttcagatactctcaatctt 243
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 384 aagaattagacattaggttttcttcctgtgtggtctgatttttcagatactttcaatctt 443
Query: 244 aaagagaaaaaaacattaacaattgccatgggtatatcaatcccaaggatatgccttcac 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagagaaaaaa-cattaacaattgccatgggtatatcaatcccaaggatatgccttcac 502
Query: 304 tgatctaatttgtgttggtacatgaagggtccagtctggatcttcagaggataaaagaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgatctaatttgtgttggtacatgaagggtccagtctggatcttcagaggataaaagaac 562
Query: 364 tggaaaatattacaaagctgtccacacctataagccataatgcaaccagacagaattatg 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagaaaatattacaaagctgtccacacctataagccataatgcaaccagacagaattatg 622
Query: 424 agcaagaacttaagcaaaatacaaaactactttataaacctacctgtacccacttctgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agcaagaacttaagcaaaatacaaaactactttataaacctacctgtacccacttctgca 682
Query: 484 atagtggcactcttgttataaagataataaactatgctttggtttcatttgatatctgtt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 683 atagtggcactcttgttataaagataataaactatgctttggtttcatttgatagctgtt 742
Query: 544 tcacaggactgcatgactagaaacctaggcaaacactctat 584
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcacaggactgcatgactagaaacctaggcaaacactctat 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_j12.g1 MSMg01no383_j12.g1 CHROMAT_FILE:
MSMg01no383_j12.g1 PHD_FILE: MSMg01no383_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:40 2005
(372 letters)
>mm_chr1_84086778_84087547
Length = 770
Score = 681 bits (352), Expect = 0.0
Identities = 367/372 (98%), Gaps = 2/372 (0%)
Strand = Plus / Minus
Query: 1 tggttcttagaagttttataggcacagtcctgttcccttaatgaaacaaggaattattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tggttcttagaagttttataggcacagtcctgttcccttaatgaaacaaggaattattag 480
Query: 61 gttgaggcctgtctgactgctccagcagaagaaagaacagaaaagttcttagaatctatt 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 479 gttgaggcctgtctgactgctccagcagaaggaagaacagaaaagttcttagaatccatt 420
Query: 121 agcatcatggaagtgtgtggagcacaaagccaaagaatgtcgatgcatttggggcaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agcatcatggaagtgtgtggagcacaaagccaaagaatgtcgatgcatttggggcaaaag 360
Query: 181 gataaaaagactggattggtcaagcaaattccttggggctgccaaagcacacagtcacag 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 359 gataaaaagactggattggtcaagcaaatcccttggggctgccaaagcacacagtcacag 300
Query: 241 ggcctattctcaccttagtctctgcaaaagtgaactcatggttcactgtggggggcgggg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 299 ggcctattctcaccttagtctctgcaaaagtgaactcatggttcact-tgggggg-gggg 242
Query: 301 gaggaatgtgggagcagagcctgggaagtgaaggagatcaaagaaggagaaggagaagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggaatgtgggagcagagcctgggaagtgaaggagatcaaagaaggagaaggagaagga 182
Query: 361 gagggaggagga 372
||||||||||||
Sbjct: 181 gagggaggagga 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 770
Length adjustment: 9
Effective length of query: 363
Effective length of database: 761
Effective search space: 276243
Effective search space used: 276243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
