Query= MSMg01no383_o17.b1 MSMg01no383_o17.b1 CHROMAT_FILE:
MSMg01no383_o17.b1 PHD_FILE: MSMg01no383_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:05 2005
(196 letters)
>mm_chr1_64973334_64973933
Length = 600
Score = 310 bits (160), Expect = 5e-89
Identities = 186/196 (94%), Gaps = 4/196 (2%)
Strand = Plus / Minus
Query: 5 gaattcttagca-gtactacaggaaggtgatgtgatagaggagagctgagatcagttctc 63
|||||||||||| | | |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 400 gaattcttagcaggaaatacaggaaggtgatgtgatagaggagagttgagaacagttctc 341
Query: 64 taatttgagtgtaaggtgtagtctcactaaggaggtgaaaatggaggtaaggtagagaag 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 340 taatttgagtgtaaggtgtagtctcactaaggaggtgaaaatggaggtagggtagagaag 281
Query: 124 ggtgggtagtacataaagcactggaaagtgt---agggggggttagatcgagtatgagaa 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 280 ggtgggtagtacataaagcactggaaagtgtgtgtgggggggttagatcgagtatgagaa 221
Query: 181 agggtgagagacctta 196
||||||||||||||||
Sbjct: 220 agggtgagagacctta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 600
Length adjustment: 8
Effective length of query: 188
Effective length of database: 592
Effective search space: 111296
Effective search space used: 111296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no383_o17.g1 MSMg01no383_o17.g1 CHROMAT_FILE:
MSMg01no383_o17.g1 PHD_FILE: MSMg01no383_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:05 2005
(466 letters)
>mm_chr1_64785911_64786776
Length = 866
Score = 893 bits (462), Expect = 0.0
Identities = 465/466 (99%)
Strand = Plus / Plus
Query: 1 acccaggaaccttgggttgttccacttggttctgcctagaccgttactgtcttactgctc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acccaggaaccttgggttgttccacttggttctgcctagaccattactgtcttactgctc 260
Query: 61 tgtcaaccttccttaacaacaaaaatctgacttttgcttagagatcccaagtagttacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaaccttccttaacaacaaaaatctgacttttgcttagagatcccaagtagttacag 320
Query: 121 tagtaatggaagggaacgttggctgggtgtggtggctcagacctctaaatccaacactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtaatggaagggaacgttggctgggtgtggtggctcagacctctaaatccaacactct 380
Query: 181 atagggggacagcaggaagattctgagtttgaagacaacctgggctacactgacagtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagggggacagcaggaagattctgagtttgaagacaacctgggctacactgacagtctg 440
Query: 241 tgtttcaaaacaaaatccaaaaaaggtgacaaagtaaacgtgtatctttttttgtgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttcaaaacaaaatccaaaaaaggtgacaaagtaaacgtgtatctttttttgtgtgtg 500
Query: 301 tgttgttttagtttttgctttcccacatatattacttaaaggttattttaagatatgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgttttagtttttgctttcccacatatattacttaaaggttattttaagatatgctg 560
Query: 361 attggggctggagctcagcagttaaagagcattgtgtgctctttcagaggacctgggttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attggggctggagctcagcagttaaagagcattgtgtgctctttcagaggacctgggttc 620
Query: 421 agttcccagtacccacacagtggctcacaaccatctgtacaatccc 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttcccagtacccacacagtggctcacaaccatctgtacaatccc 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
