CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAACCCTTTCTTAAACATAATAAAACCAATTTACTGCAAATCTAC
AGCCAATATCAAATTGAATGGAGACATACTTGAAGCAGTCCCAAGAAAAT
CGGGGACAAGACAAGGATGCCCACTCTTCCCATATCTATTTAGTTTAGTA
CTTGAAGTGTCAGCTAGAACAATAAGACAATAAAAAGAGTTCAAAGAGTT
ACAAGTTGACAAAGTAGAAATAAAAGTATCACTATTTGCAGATGATATGG
TAATATACATAAGTGATCCCAAATATTCTACCAGAGAACTTCTTCATCTG
ATAAAAAAAAAAAAAACAACAAAAAAAAAAAACAAACAAACAAAAAAAAA
AACTTCAGGAAAGTGGCCAAATATAAAGTTAAATCAAATAAATCCGTAGC
CTTCATTTATACAAATGATAAACAGTCCAAGAAAGAAATTAGGGAAAAAG
CTCCCTCCACAATAGCCACAATTAATATTAAATGCCTTGGGGTAACTCTA
ACCAAACAAGTGAAAGACTTGAATGACAATAACCTCAAGTCTCTCAAGAA
AGAAATTGTAGACGATCTCAGAAAATGGAAAGATCCCCCATGCTCATGGA
TTGGTAGAATTAACATAGTAAACCTGGCTATCCTACCCAAGCCAATCTAC
AGATTCAGTGCAATCCCCATCAAACTCACAACAN

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATCAAGTTTCAACCCCAGTAAAAG
ATCTTGATACACAGATGTGAACTGCGTACAGAATATAAGAGTGTGGAACT
TTGTTTGTCATATTTTCAGGGATCAAGAAACAATCACAGCTATGTCTGAA
GACAGTTCTCAAAATTAAATCACACATAATTTGCTTGAGAACAAGAATTA
ATTTTCACAAATACTTAAATTGGATTAGTACCAAATCATTGCCTTTCAAC
ATTTTAATTCAGGTTTTTTAGAAACTATTGTTTGTATAAAGCTCTGTCTT
CCCTCCCAGCAATATACATAGAATTTCAGGGTTTTGTTCCTGGTCCAATG
CATGCTAGTTGAGGAGGATGAATGAAACATAGAGAAGTGAAACACACAAT
CTGTTTCTGTAAGAAGCTTGGTAATTTTTAGAAGCACTGTCTGTTTTGAC
TTGTTCATTGTTTAACTTAATGGGAATAATAGTAATGATATAATGAATAA
TAATAATAATAATAATAATAATAATAATAATAATGAGGTGAGCATTACTG
TATCTATTTCATAAATTACAAAAAAGGGAACCAGGCTATTCACTTGAAAT
CATACTTGGAAGTGGCAGAACAAATTAACAACCACAGATCACATAACTCC
TGAATTAGGGTATATGTTAATAAATATTAT

Query= MSMg01no383_p08.g1 MSMg01no383_p08.g1 CHROMAT_FILE:
MSMg01no383_p08.g1 PHD_FILE: MSMg01no383_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:08 2005
         (559 letters)



>mm_chr1_111902467_111903427
          Length = 961

 Score =  973 bits (503), Expect = 0.0
 Identities = 536/561 (95%), Gaps = 23/561 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcaagtttcaaccccagtaaaagatcttgatacacagatgtgaactgcgtacagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acatcaagtttcaaccccagtaaaagatcttgatacacagatgtgaactgcgtacagaat 593

                                                                       
Query: 61  at--aagagtgtggaactttgtttgtcatattttcagggatcaagaaacaatcacagcta 118
           ||  ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 592 ataaaagagtgtggaacttagtttgtcatattttcagggatcaagaaacagtcacagcta 533

                                                                       
Query: 119 tgtctgaagacagttctcaaaattaaatcacacataatttgcttgagaacaagaattaat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgtctgaagacagttctcaaaattaaatcacacataatttgcttgagaacaagaattaat 473

                                                                       
Query: 179 tttcacaaatacttaaattggattagtaccaaatcattgcctttcaacattttaattcag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttcacaaatacttaaattggattagtaccaaatcattgcctttcaacattttaattcag 413

                                                                       
Query: 239 gttttttagaaactattgtttgtataaagctctgtcttccctcccagcaatatacataga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gttttttagaaactattgtttgtataaagctctgtcttccctcccagcaatatacataga 353

                                                                       
Query: 299 atttcagggttttgttcctggtccaatgcatgctagttgaggaggatgaatgaaacatag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atttcagggttttgttcctggtccaatgcatgctagttgaggaggatgaatgaaacatag 293

                                                                       
Query: 359 agaagtgaaacacacaatctgtttctgtaagaagcttggtaatttttagaagcactgtct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agaagtgaaacacacaatctgtttctgtaagaagcttggtaatttttagaagcactgtct 233

                                                                       
Query: 419 gttttgacttgttcattgtttaacttaatgggaataatagtaatgatataatgaataata 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 232 gttttgacttgttcattgtttaacttaatgggaataatagtaatgatataatg------- 180

                                                                       
Query: 479 ataataataataataataataataataataatgaggtgagcattactgtatctatttcat 538
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 --------------aataataataataataatgaggtgagcattactgtatctatttcat 134

                                
Query: 539 aaattacaaaaaagggaacca 559
           |||||||||||||||||||||
Sbjct: 133 aaattacaaaaaagggaacca 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space:   522099
Effective search space used:   522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)