BAC Information

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BAC

Clone NameMSMg01-384B23
Chromosome1 (Build37)
Map Location 172,627,384 - 172,627,892
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B23.T7 (MSMg01no384_b23.b1)MSMg01-384B23.TJ (MSMg01no384_b23.g1)
ACCAG487633AG487634
length767764
length of high quality
(start - end)		513 (33 - 545)444 (62 - 505)
definitionCHROMAT_FILE: MSMg01no384_b23.b1 PHD_FILE: MSMg01no384_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:20 2005CHROMAT_FILE: MSMg01no384_b23.g1 PHD_FILE: MSMg01no384_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCCCTTT
CCACAAGGCCTCATTCAAGCCTCCCTCCCACAAGACCCTCATCTTCCCCT
GTGGCCCCCAAACCTGTTCACCTGTGTCTTAGCATATGCCTCCTCGGGCC
TCGTCAGGGTCTCTCATTCCTGCAATGCTCTCCTCCTTGGTTTGGCTGTC
TTTGGAGAACATTTCTTGTTCCTGTCAGAACTCACCAAGGACAGCAGTGG
ACTCATGTCCTGGCTCAGGTTCTGCTCACGTGACAGGACCTTTGCATTTT
AAGAACTACACTTATTCATTTATTTGTGGGCACATGCACTATAATGCGTA
GACATGGGGGTCAGAGGACAACTTTGTGAGAGCTGTTTCTCTCCTTCCAC
CGTAAGGATCTCAGGGACTGATTTCGGATCTTCGGGCTGGAGGCCACCTC
ACACTCTCAACAGCCCCTGATACCCCCAGGCTCCAAATGGCCTCTGGGTT
ACTCTGCCCTTCTAAATCTTCTCACTGGCAGAGGAATTCCTGTTTGCCTC
CATAGACCCATGCAAACTCCTTCACCTCACAATGGTCACTTCTGTTATGG
AGGGGCCGCTTTTCTCCCTGATGCATTTGCAGACAAGAAAGGGCCTTCCC
AGGATGCCCTTTTGGTCATCGCATTCCTGCAGGAAAACAATCCCGCCTTC
TGTGATCCAAAGGGGCCAGGCCTTTATTTTCTCCCCGTCCTTAAAAAAAA
GAGAAGGCATAGGCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAAAATCAGTCATTTATCAGCTTGAGATTGCTTCTGAGT
TAGGGATGGGTTTGTTTCTACTTCTTTCAGTTCTAGGATTCCATCTGGTG
CAGACCTGAGCACGCCTGTGCATGCGCCCTGAGTCCTTGTGAGTTCATAT
GTGCGCAGATCGATTCTGCCATCTTGAGAAAGTCTTTTTTCTTGCTGCCC
TAAATCCTCTCTGGTTCTTACATTCTTTCTGCTTCCTCTTCTGCAGGGTC
TGGGAGCCCTGAGGGGCAGGATTTGATGAAGATATTCTACTTAGGGCTGA
GAGTTTCAAGGTCTCTCACTCTCTACAGAATGTCTGACTGTGGGTCTCTG
TATCTGCTCCCATCTGCTGCAGGAGGAAGATTCTCTGATGATGGCTGAGC
AAGGCACTGATCTATACATGTATAGCAGAATGTCATTATGATTTTCTTTT
CTTTCACTTTCTTTCTCTTTCTTTCCTTCTTTCTTTCCTTCTTTCCTTTC
TTTCTTTCTTTCTTTCTTTTCTTCCTTCGTTCCTTCCTTCCTTCCTCCTT
TCTCTCTTCCCTCCTTTTTTAACCCCCCCCATCTTGGTTTTTACCTTAAG
CCCTCCGTCTTTGTTTTCCATTAGGTTCCCTGCGCCCGAACATTTACCTC
TTCTTCCCCCTTTTTTCTTTTCTATCGTATCATTTTTTTTTTTCCCGTTT
GCTTCTCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b23.b1 MSMg01no384_b23.b1 CHROMAT_FILE:
MSMg01no384_b23.b1 PHD_FILE: MSMg01no384_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:20 2005
         (513 letters)



>mm_chr1_172627180_172628092
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccctttccacaaggcctcattcaagcctccctcccacaagaccctcatcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcccctttccacaaggcctcattcaagcctccctcccacaagaccctcatcttc 264

                                                                       
Query: 65  ccctgtggcccccaaacctgttcacctgtgtcttagcatatgcctcctcgggcctcgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccctgtggcccccaaacctgttcacctgtgtcttagcatatgcctcctcgggcctcgtca 324

                                                                       
Query: 125 gggtctctcattcctgcaatgctctcctccttggtttggctgtctttggagaacatttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggtctctcattcctgcaatgctctcctccttggtttggctgtctttggagaacatttct 384

                                                                       
Query: 185 tgttcctgtcagaactcaccaaggacagcagtggactcatgtcctggctcaggttctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttcctgtcagaactcaccaaggacagcagtggactcatgtcctggctcaggttctgct 444

                                                                       
Query: 245 cacgtgacaggacctttgcattttaagaactacacttattcatttatttgtgggcacatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacgtgacaggacctttgcattttaagaactacacttattcatttatttgtgggcacatg 504

                                                                       
Query: 305 cactataatgcgtagacatgggggtcagaggacaactttgtgagagctgtttctctcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cactataatgcgtagacatgggggtcagaggacaactttgtgagagctgtttctctcctt 564

                                                                       
Query: 365 ccaccgtaaggatctcagggactgatttcggatcttcgggctggaggccacctcacactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaccgtaaggatctcagggactgatttcggatcttcgggctggaggccacctcacactc 624

                                                                       
Query: 425 tcaacagcccctgatacccccaggctccaaatggcctctgggttactctgcccttctaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaacagcccctgatacccccaggctccaaatggcctctgggttactctgcccttctaaa 684

                                        
Query: 485 tcttctcactggcagaggaattcctgttt 513
           |||||||||||||||||||||||||||||
Sbjct: 685 tcttctcactggcagaggaattcctgttt 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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