BAC Information

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BAC

Clone NameMSMg01-384D03
Chromosome1 (Build37)
Map Location 163,983,193 - 163,983,737
singlet/doubletsinglet
Overlap geneDnm3
Upstream geneDars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc
Downstream geneLOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384D03.T7 (MSMg01no384_d03.b1)MSMg01-384D03.TJ (MSMg01no384_d03.g1)
ACCAG487689AG487690
length745791
length of high quality
(start - end)		550 (34 - 583)62 (64 - 125)
definitionCHROMAT_FILE: MSMg01no384_d03.b1 PHD_FILE: MSMg01no384_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:26 2005CHROMAT_FILE: MSMg01no384_d03.g1 PHD_FILE: MSMg01no384_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAAGC
TTTTGTTAATTAAAAAGAGCAGAGCCGAAACCGTTACAGATTATGTCAGT
TTAGCCCCACATTTTAAAAGCACAGGGCTCCAGATCGCCTTTAAAGTACA
TGATTTACACCATATTCCAGTAAACCGATGCAGGCGGAGACTTTTCATTC
ACTCTTGTGTGTCATGTGGAACATGCTAAAAGCTGTTGGTTCTCCCCAGG
ACAGGGCAGGGAGAATTAACTCCAGCCAGCATTGCTTCTAATATGTGGCT
TTGACTTTCAGAGCAATGGAGTGCAGTGGGAATCATAGAAGCAACTGACT
GAGAAAATCCTCAACGCCCTAACAGGAAGCAGGCTTCTTTCCATATTCCT
TCCAAGAGTTTTCTTTCACATACAAATCCAAGAAACAAAATCTGGAAAAA
AAAAATTGTGTGGAAGCCACAGTAGTTCTTACTGTTTGGGAATTACACAG
AGAGAATATTTGTGTCACATACAGACACACACACACACATACACACAAAT
GAATTTGATTATGTGATCTGAACAGCTGANAGAAAGAGACAATACCATCT
CCATTTGATTGTACATGCTATATTTACTAAGATTCCTTGAAGAAAGCTTA
AGAATCCTTGTCCTGTGAGTCACTCTGTGNTGTGTGTGTGTGTGNGTGTT
TTTTNNCANNCACTCCCTTTCCCTCCTTTACATTCTTCTTATCAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGTACTTTGACTTTTAAAATGAGCCTATGTGTGTGT
GTGTGTGTGTGTGTGTGTGGGGAGGCCCCNCCCCCCCCCCCCCCCCCNCC
NCCCCNCNCCCCNNNNCCCNCCCCNCCCCNCCCCCCCCCCCCCCCCCCCC
CCTTNCCNCCCCCCCCTTCCCCCNCCCCNCCCCTCTCTTCTTCTCCCCTT
CCCCCCCCCTCTCCTCCTTCCCTCCTTCCTCCCTCTTTTCACCCCCCCCT
CCCCCCCCCTTTTTCTCCCCCCCCCCCCTTTTTCCCCCCTTTCCCTCCCT
CTCCTCACTTCCTTTTTATCCATTTATTATTCTCCACTCCCCACCCCCTT
TTTTTCTTTCCCTCCCTTATATCACCCTATTAATATCCCCATTCCCCCCC
CATTTTTTCCCACCTTTTTTTTTTCATTTCCTCCATCACCTCACTTATTA
TTCCCTATCTTCTTCCCCCCCCCTCCCTCATCTCTTTCTTTTTCCCCTCA
CCCACACCTTATCCCTTTTCCCACCTATCATACCTCCCCCTCTCCCTCTC
TCTACATTCCTCCTATTTCCATTTTGCCCCCCCTTTTTTCCCCCCTCCCT
TCACCCTCCCTTATCTTCTCCCTACCCTACTTATCTACCCCCTTTCTATC
CCACCCTCCCTTCCCTCCCCTCCTCCCTTTCTCCCCCCATATCCCCTCCC
CACCGCCACTTTTTTTTTCCTCCCATTCCCCCCCCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_d03.b1 MSMg01no384_d03.b1 CHROMAT_FILE:
MSMg01no384_d03.b1 PHD_FILE: MSMg01no384_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:26 2005
         (550 letters)



>mm_chr1_163983057_163984005
          Length = 949

 Score =  994 bits (514), Expect = 0.0
 Identities = 537/546 (98%), Gaps = 5/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaagcttttgttaattaaaaagagcagagccgaaaccgttacagattatgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattccaaaagcttttgttaattaaaaagagcagagccgaaaccgttacagattatgtc 622

                                                                       
Query: 65  agtttagccccacattttaaaagcacagggctccagatcgcctttaaagtacatgattta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttagccccacattttaaaagcacagggctccagatcgcctttaaagtacatgattta 562

                                                                       
Query: 125 caccatattccagtaaaccgatgcaggcggagacttttcattcactcttgtgtgtcatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccatattccagtaaaccgatgcaggcggagacttttcattcactcttgtgtgtcatgt 502

                                                                       
Query: 185 ggaacatgctaaaagctgttggttctccccaggacagggcagggagaattaactccagcc 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaacacgctaaaagctgttggttctccccaggacagggcagggagaattaactccagcc 442

                                                                       
Query: 245 agcattgcttctaatatgtggctttgactttcagagcaatggagtgcagtgggaatcata 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 agcattgcttctaatatgtggctttgactttcagagcaatggagtgcagtgggaatcaga 382

                                                                       
Query: 305 gaagcaactgactgagaaaatcctcaacgccctaacaggaagcaggcttctttccatatt 364
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcaactgactgaggaaatcctcaacgccctaacaggaagcaggcttctttccatatt 322

                                                                       
Query: 365 ccttccaagagttttctttcacatacaaatccaagaaacaaaatctggaaaaaaaaaatt 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ccttccaagagttttctttcacatacaaatccaagaaacaaaatctgg-aaaaaaaaatt 263

                                                                       
Query: 425 gtgtggaagccacagtagttcttactgtttgggaattacacagagagaatatttgtgtca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtgtggaagccacagtagttcttactgtttgggaattacacagagagaatatttgtgtca 203

                                                                       
Query: 485 catacagacacacacac--ac--acatacacacaaatgaatttgattatgtgatctgaac 540
           |||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 202 catacagacacacacacatacatacatacacacaaatgaatttgattatgtgatctgaac 143

                 
Query: 541 agctga 546
           ||||||
Sbjct: 142 agctga 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space:   507060
Effective search space used:   507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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