Query= MSMg01no384_d17.b1 MSMg01no384_d17.b1 CHROMAT_FILE:
MSMg01no384_d17.b1 PHD_FILE: MSMg01no384_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:29 2005
(485 letters)
>mm_chr1_32617514_32618398
Length = 885
Score = 789 bits (408), Expect = 0.0
Identities = 459/476 (96%), Gaps = 4/476 (0%)
Strand = Plus / Minus
Query: 12 gaattctttcaagctcataagctcttgaaaaaacagtgagattttgaatctgaaaggtta 71
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 gaattctttcaagcacataacctcttgaaaaaaca-tgagattttgaatctgaaaggtta 627
Query: 72 gagattgtgcctgaccgaaatgacacatacattttc-agaggctacttttcaaaagatgt 130
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 626 gagattgtccctgaccgaaatgacacacacattttctagaggctacttttcaaaagatgt 567
Query: 131 ctttatgagcaatgaaataaatctctttaaacttaaaatgtaggtaagcgttcctcattg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctttatgagcaatgaaataaatctctttaaacttaaaatgtaggtaagcgttcctcattg 507
Query: 191 gctgcttttgttttaccatttacttacttgggagtatttgccctttagtttcatcaagtt 250
|||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 gctgcttttgctttaccgtttacttacttgggagtatttgccctttagtttgatcaagtt 447
Query: 251 ttctaatccattaggtttgagaggtgtttaagtgtgtgcattttaagccgcagttgctgg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttctaatccattaggtttgagaggtgtttaagtgtgtgcattttaagccgcagttgctgg 387
Query: 311 ggaattaatcactgctctcg-caatatgccttacttaggactttctgagaacaacagcac 369
|||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 ggaattaatcactgctct-gacaatatgccttactgaggactttctgagaacaacagcac 328
Query: 370 aggaagacaacggaagactgaaccagcagaatgattcttcaaccgcctttcacctgacaa 429
|||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct: 327 aggaagacaacggaagactgaaccggcagaatgattcttcaactgcagttcacctgacaa 268
Query: 430 agctcctcgcctgcgttttccacctggtcttcaaaataactctgagttaagaaaag 485
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 267 agctcctcgcctgcgttttccacctggtcttcaaaataactctgacttaagaaaag 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_d17.g1 MSMg01no384_d17.g1 CHROMAT_FILE:
MSMg01no384_d17.g1 PHD_FILE: MSMg01no384_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:29 2005
(531 letters)
>mm_chr1_32453022_32453952
Length = 931
Score = 940 bits (486), Expect = 0.0
Identities = 519/530 (97%)
Strand = Plus / Plus
Query: 1 ttgtccgcagccaaagcattgatttttcagagagtggaacaggaatgaatcctcctgctg 60
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 201 ttgtccgcagccaaagcattgatttttcagagaatgggacaggaatgaatccccctgctg 260
Query: 61 cagcaggtggagtcttggaagctaaagtagtggttgtccaactaagttccctgaatgagg 120
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 261 cagcaggtggagtcttggaagctaaagtagttgatgtccaactaagttccctgaatgagg 320
Query: 121 cagaagctgcagactcagaaaacccctaaagagtgtctccagtgtatctggaagacagtc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagctgcagactcagaaagcccctaaagagtgtctccagtgtatctggaagacagtc 380
Query: 181 cttctcttcctcctccggataagccccgtgagtcttactgcccagggtgtacacacattt 240
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 cttctcttcctcctccagataagccccgtgagtcttactgcacagggtgtacacacattt 440
Query: 241 ttatagacagttgggttctgattgggtgagttagaataaaaaacagaaaaatcagcgatg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttatagacagttgggttctgattgggtgagttagaataaaaaacagaaaaatcagctatg 500
Query: 301 aactgttagacagggatgggaagagagctgagccatgttaagaatttaagaatgtttccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgttagacagggatgggaagagagctgagccatgttaagaatttaagaatgtttccg 560
Query: 361 atcagatccttgagttaggtaggaagtagacacttagctgttggtttccagttgctctgg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 atcagatccttgtgttaggtaggaagtagacacttagctgttggtttccagtttctctgg 620
Query: 421 ggtattctgatcaggtcaccttcctccactcttttcctgctgccatctgcagctcagcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtattctgatcaggtcaccttcctccactcttttcctgctgccatctgcagctcagcct 680
Query: 481 tagggtattttcaggcctttttcagcattttccttgcccccatgtgcctc 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagggtattttcaggcctttttcagcattttccttgcccccatgtgcctc 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
