Query= MSMg01no384_f12.b1 MSMg01no384_f12.b1 CHROMAT_FILE:
MSMg01no384_f12.b1 PHD_FILE: MSMg01no384_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:37 2005
(515 letters)
>mm_chr1_96513016_96513930
Length = 915
Score = 907 bits (469), Expect = 0.0
Identities = 507/533 (95%), Gaps = 21/533 (3%)
Strand = Plus / Minus
Query: 4 ggaattccaggggtagaagaaatagtcttctctagggaagaatataccaaattgtttcca 63
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggaattctaggggtggaagaaatagtcttctctagggaagaatataccaaattgtttcca 615
Query: 64 atattaaatggctaaccttgaaaacataaacatacaagtaacactatgagatgactgagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 614 atattaaatggctaaccttgaaaacataaacatacaagtaacactatgagacgactgagc 555
Query: 124 aggttatattcaaatatttgggattatatatgtgtgccatatgtttgcaaccatagtttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aggttatattcaaatatttgggattatatatgtgtgccatatgtttgcaaccatagtttt 495
Query: 184 cttcagataaaatggcattggattaaacttttaaagcaaatgctgataaaaagaaattct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cttcagataaaatggcattggattaaacttttaaagcaaatgctgataaaaagaaattct 435
Query: 244 tataaacaatatttccacttttactttttcttgtaaaattccttatactaatttaaatcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tataaacaatatttccacttttactttttcttgtaaaattccttatactaatttaaatcc 375
Query: 304 aagacat---------------------acaacaacaacaacaacaacaacaacagaagc 342
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 374 aagacatacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagaagc 315
Query: 343 aacagcatttaaagaaaatcctcccatcctacctccattctctggggacttcacctagac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aacagcatttaaagaaaatcctcccatcctacctccattctctggggacttcacctagac 255
Query: 403 aagaacttagctatcctctttcctgtggaccagtaagtccaggcagaaaacatccaggaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagaacttagctatcctctttcctgtggaccagtaagtccaggcagaaaacatccaggaa 195
Query: 463 atctgggacactatgaaaagaaagagtatatggataagaaaaatagaggaaga 515
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 194 atctgggacactatgaaaagaaagagtatacagataagaaaaatagaggaaga 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_f12.g1 MSMg01no384_f12.g1 CHROMAT_FILE:
MSMg01no384_f12.g1 PHD_FILE: MSMg01no384_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:37 2005
(547 letters)
>mm_chr1_96361719_96362665
Length = 947
Score = 980 bits (507), Expect = 0.0
Identities = 537/547 (98%)
Strand = Plus / Plus
Query: 1 tttccaagaagaccatatagtagaaaagaagcatcctggtgaggcattggagaaatcata 60
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct: 201 tttccaagaagaccatatagcagaaaagaagcatactggtgagacattggagaaatcata 260
Query: 61 ggcaatgtagctagaaccttcccaaagcagcaaacagaaagtgtgaagatggttatgaaa 120
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaatgtagctcgaatcttcccaaagcagcaaacagaaagtgtgaagatggttatgaaa 320
Query: 121 gtcattcagagctcctctattacagagaacattcaacattttcaagaagtcctctttcaa 180
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 321 gtcattcagagctcctctattacagagaagattcaacattttcaagaggtcctctttcaa 380
Query: 181 cttcatgccttcttcttgtgcattctcagctgaattcagcagaaagttgattactagaat 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cttcatgccttcttcttgtgcattctcagctgaattcagtagaaagttgattactagaat 440
Query: 241 acatgcaatttaccagtggccacctcactgaagaaatagacactctttccttcagcagcc 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 acatgcaatttaccagtggccacctcactgaagaaacagacactctttccttcagcagcc 500
Query: 301 attaactaccaacagtattccaggagaaacgaactgttgctgggctcaatcttgtgcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaactaccaacagtattccaggagaaacgaactgttgctgggctcaatcttgtgcaga 560
Query: 361 tcaccacaattgtagtaattcatgagcacaaaggtcatgctacatccaatgatgtttcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tcaccacaattgtagtaattcatgagcacaaaggtcatgctacatccaatgatgtttaat 620
Query: 421 tttgccccacatctcttcatcctctgcatctcacattcttgctacccctttctttttgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgccccacatctcttcatcctctgcatctcacattcttgctacccctttctttttgga 680
Query: 481 ggaggttatataaatggtccatttaggcctgagaactccatccttatctgtccccagcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaggttatataaatggtccatttaggcctgagaactccatccttatctgtccccagcac 740
Query: 541 ttgaacc 547
|||||||
Sbjct: 741 ttgaacc 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
