BAC Information

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BAC

Clone NameMSMg01-384F16
Chromosome1 (Build37)
Map Location 44,773,105 - 44,773,568
singlet/doubletsinglet
Overlap geneGulp1
Upstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1
Downstream geneLOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384F16.T7 (MSMg01no384_f16.b1)MSMg01-384F16.TJ (MSMg01no384_f16.g1)
ACCAG487811AG487812
length779752
length of high quality
(start - end)
481 (33 - 513)501 (60 - 560)
definitionCHROMAT_FILE: MSMg01no384_f16.b1 PHD_FILE: MSMg01no384_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:38 2005CHROMAT_FILE: MSMg01no384_f16.g1 PHD_FILE: MSMg01no384_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAAAAG
CATTTAGTTATTAGAGGCATTATAACGAAGGTTGGATATGTCTATCATTT
TGTGAAAGAACAAGAAAACTTGTTTATGGACAAATGATATTTTTGAAAAT
AGCACAAATCATCTGATCCTTAAAGGGCCAAGCAGTAGAATTCTGAAACT
TGAGATGTGAATTCGAGAGACTGGGCAGAAAATAAAACTGAGAAATATTT
GAGAAAGATCAAAGACGTTCAAAGCTTTTATCAAGACTGTTTGATGAGTG
GCTCAGCACATGCTGCATCAAACACCCAGCCAGGAGGTGAGCATTTCTTT
GAACAAAAGATCCGGGAGAAATGAGAAGTGAGGATAAAAGAGTTACCACT
GAAGGTAAAATTATGGCAGGAAACACGTTGGCTAAACAATGATATTAATT
GATCAGAGAAGAAGCATCCTTACTGGGTTCTATGGTCTCATTTTAACTGC
ATTCTACTTCAATACCCAGGACTGCATCTTTGGATTCAGTCAACAGAGGA
AGGAGCGTATTTGGAGGAAAACTGTACTAATATAGATTATTTTTCTTATA
AATGATCTCCCAACAGTACAAAATATCATGTGTTTGGATAAAGGGGAGAA
TGTGTTAAGAACTAGGTACCCCTAAAAGGGAGTATGTGGGTAAAACAGGG
GCTATTTTACCTGCCCGAAAGAATTGGAGGAAATTAACTCCCTTGGTTGG
GGACAGAACCCTCCCTCTGAAAATAAAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATC
TTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTGATGTGTTCTTGGATTTGGTTAGCGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATTTTTGTTG
GGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAAC
TGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCAT
CTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATT
TCTTTAGGCGATATGGGACTGTTTTAGATGATCAACTTGATCCTGATTCA
ACTTTGGTACCTGGTATCTGTCCAAAAATTGTCCATTTCCCTCAGCTTTT
TCCACCTTGCCGAGATTATCCCTTCGTAAAACGACCCCATTTTTGCTCCC
ATTTTTTCATGATATGTTTTCCTGTCCCCCTCTTTCTTTCTTAATCTCCC
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_f16.b1 MSMg01no384_f16.b1 CHROMAT_FILE:
MSMg01no384_f16.b1 PHD_FILE: MSMg01no384_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:38 2005
         (481 letters)



>mm_chr1_44772901_44773780
          Length = 880

 Score =  764 bits (395), Expect = 0.0
 Identities = 451/477 (94%), Gaps = 13/477 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataaaagcatttagttattagaggcattataacgaaggttggatatgtctatc 64
           ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct: 205 gaattctataaaagcatttagttattagaggcattgta-cgaaggttgggtatgtctatc 263

                                                                       
Query: 65  attttgtgaaagaacaagaaaacttgtttatggacaaatgatatttttgaaaatagcaca 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||      
Sbjct: 264 attttgtgaaagaacaagaaaacttgttcatggacaaatgatatttttgaaaat------ 317

                                                                       
Query: 125 aatcatctgatccttaaagggccaagcagtagaattctgaaacttgagatgtgaattcga 184
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ------ctgatccttaaagggccaagcagtagaattctgaaacttgagatgtgaattcga 371

                                                                       
Query: 185 gagactgggcagaaaataaaactgagaaatatttgagaaagatcaaagacgttcaaagct 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 372 gagactgggcagaaaataaaactgagaaatatttgagaaagatcaaagacattcaaagct 431

                                                                       
Query: 245 tttatcaagactgtttgatgagtggctcagcacatgctgcatcaaacacccagccaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 432 tttatcaagactgtttgatgagtggctcagcacatgctgcatcaaacaccttgccaggag 491

                                                                       
Query: 305 gtgagcatttctttgaacaaaagatccgggagaaatgagaagtgaggataaaagagttac 364
           |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 492 gtgaacatttctttgaacgaaagatccgggagaaatgagaagtgaggataaaggagttac 551

                                                                       
Query: 365 cactgaaggtaaaattatggcaggaaacacgttggctaaacaatgatattaattgatcag 424
           |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct: 552 cactgaaggtaaaattatggcaggaaacacataggctaaacaatgatatgaattgatcag 611

                                                                    
Query: 425 agaagaagcatccttactgggttctatggtctcattttaactgcattctacttcaat 481
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 612 agaagaagcatccttactgtgttctatggtctcattttaactgcattctacttcaat 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space:   409770
Effective search space used:   409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)