Query= MSMg01no384_g04.b1 MSMg01no384_g04.b1 CHROMAT_FILE:
MSMg01no384_g04.b1 PHD_FILE: MSMg01no384_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:40 2005
(538 letters)
>mm_chr1_149211715_149212652
Length = 938
Score = 1025 bits (530), Expect = 0.0
Identities = 533/534 (99%)
Strand = Plus / Plus
Query: 5 gaattcaatgaattttgttccttcatgtgtatgctaaatcttagtttatatttgtctcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgaattttgttccttcatgtgtatgctaaatcttagtttatatttgtctcct 264
Query: 65 ggccagaagactgctcctatcagtttttccccagcctagagcatgataacacttaaaata 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccagaagaccgctcctatcagtttttccccagcctagagcatgataacacttaaaata 324
Query: 125 ttgtctttttcagaggaccctgcatccttgaattcattcataattttttggcttttacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtctttttcagaggaccctgcatccttgaattcattcataattttttggcttttacag 384
Query: 185 gctttaaaccacctctttttaaattatctctgaaactacatggaagttgtaaatatgaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctttaaaccacctctttttaaattatctctgaaactacatggaagttgtaaatatgaac 444
Query: 245 ttagagtagttatgacagaattcacaaggcttgtgcaagcccaagccagatgaaatcaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagagtagttatgacagaattcacaaggcttgtgcaagcccaagccagatgaaatcaca 504
Query: 305 gcatcgagaaagaagactgatttaaaaggtccacctccagcagagaaagtattggctatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatcgagaaagaagactgatttaaaaggtccacctccagcagagaaagtattggctatc 564
Query: 365 aatagttactaggaggatagacactcttctttaaaaggtggcccttttaggtagatcatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatagttactaggaggatagacactcttctttaaaaggtggcccttttaggtagatcatg 624
Query: 425 atccaatggaagctcaaaacatctgtgaatatatcagcagtaaaaattgtgcaaaattct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atccaatggaagctcaaaacatctgtgaatatatcagcagtaaaaattgtgcaaaattct 684
Query: 485 caaatacttaactgttaaaagaaaaaattgtaaataaacagaaagcatggtcta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaatacttaactgttaaaagaaaaaattgtaaataaacagaaagcatggtcta 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_g04.g1 MSMg01no384_g04.g1 CHROMAT_FILE:
MSMg01no384_g04.g1 PHD_FILE: MSMg01no384_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:40 2005
(620 letters)
>mm_chr1_149401215_149402234
Length = 1020
Score = 1006 bits (520), Expect = 0.0
Identities = 584/606 (96%), Gaps = 3/606 (0%)
Strand = Plus / Minus
Query: 1 actttgtagaccaggctggcttccaactcagaaatctgcctgcctctgcctcctgagtgc 60
|||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 895 actttgtagaccaggctgacttccaactcaaaaatctgcctgcctctgcctcccgagtgc 836
Query: 61 tgggattaaaggcatgtgccacca--cgcctggcgcattatgcatttttggcctgaaggc 118
|||||||||||||||| |||||| |||| || |||||||||| |||||||||||||||
Sbjct: 835 tgggattaaaggcatgcaccaccacgcgcccggtgcattatgca-ttttggcctgaaggc 777
Query: 119 atgattccccttttggcatccatcctccgaaaacatttctcaggtccaaggatcacttgt 178
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 776 atgattccccttttggcatccatcctcagaaaacatttctcaggtcaaaggatcacttgt 717
Query: 179 acctgcaatccaaacagattcttctgctctgggtattcaaattttgaactgctgagacaa 238
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 716 acctgcaatccaaacatatccttctgctctgggtattcaaattatgaactgctgagacaa 657
Query: 239 aatagttaaattattttaaaagaatgtctaagaagaaaacccattcttgtttctgagcat 298
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 656 aatagttaaattattttaaaagaacgtctaagaagaaaacccattcttgtttctgagcat 597
Query: 299 caacatgaagagcttgaaacagcctccagtgccagtgtctgtgcagaatgtatatcaaaa 358
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 596 caacatgaagagcttgaaacagcctccagtgccagtgtctgtggagaatgcatatcaaaa 537
Query: 359 gcagcataaatgtattagaagtcatattgctaatctgattcatagagtcatcaatatctg 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcagcataaatgtattagaagtcatattgctaatctgattcatagagtcatcaatatctt 477
Query: 419 gacaaacagtgaaattgatatgtattttcctcatcataagcaaaattttctagaatattt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gacaaacagtgaaattgatatgtattttcctcatcataagcaaaattttctagaatattt 417
Query: 479 gtcaatcaaatataacttttaaaggtaatttgttaattgtctgctttaatacgttacttg 538
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 416 gtcaatcaaatataacttttaaaggtaatatgttaatcgtctgctttaatacgttacttg 357
Query: 539 tttaaatctttaaagctttcttttttaatatttaactaatttggcttatttgtttattta 598
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 356 tttaaatctttaaagctttcttttttaatatttaactaatttggcttatttatttattta 297
Query: 599 tttatt 604
||||||
Sbjct: 296 tttatt 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
