BAC Information

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BAC

Clone NameMSMg01-384G18
Chromosome1 (Build37)
Map Location 135,092,793 - 135,093,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384G18.T7 (MSMg01no384_g18.b1)MSMg01-384G18.TJ (MSMg01no384_g18.g1)
ACCAG487862AG487863
length765758
length of high quality
(start - end)		476 (34 - 509)418 (62 - 479)
definitionCHROMAT_FILE: MSMg01no384_g18.b1 PHD_FILE: MSMg01no384_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:43 2005CHROMAT_FILE: MSMg01no384_g18.g1 PHD_FILE: MSMg01no384_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCGATC
CACCTGCCTCTGCATTCTGATTGCTGGGATTAGAGGTACCTGGTGAAAAC
ACTTTCTATCACCCAGGGAACCTGGTTAAATTCCAGGCCCAAGACAGGGG
GAAGGGAAGGGATGCAAGCGTGAGGAGGCTGCAGGATGAGGGTGGGGGAG
GGGCTACAGCATCTCCTCAGCAGGGGCGTCAAATGTTAGAAAACAAACCC
ACCAGTGTTTGCTGACACGTGCAAAGAGAAGGCCTCACACAAAAGCCACA
CATTATCCCATAATTATTGTCTCTCTCATGCCTGCAATTAACAGCTGTCT
GAGAGGCGGCTGCTGGGGTAAATAAATGTTCACCCCCATTACAGTCAATC
AGCCAGCTGAAGCGCCAATTAACAAGCCCACTGCAGAGACACTTGGGGAC
CCAGCAGCAACTGCGGGAGGAAGTAGATGGGAGAAGATAGCATGTGTCTT
GGGTACGATCTATAAGGATGCTCAAGGTAATTCCAATGAGCTACCTGGAG
CAAAGAGAAGCTGAACTCTCTGCGACCGCCTATATCTGTGGCCTGAGGAG
AAGCCCCCGACCGGGGAAAAGTTTGGTTGGCACACACAGCCGTTAAACGC
CTTTTAAAAAATACCTACCTCTTTCTCTTGGGAAACACAGAGGCAAAAGA
ATTACCCCTTTTTTCGCGTAGATTTTTCCTTTTCCCTCCCCTTTACTTTT
CCCCGCTGGTGGGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTATGTAAACCAGACTGCCTCCCGAGTGCTGAGATTTA
AGGCTTGCCACAGCATACCTTGCTTGCATAAAGAGGTTTTGAAAGAAAAT
AGGGGCTGGTCGTGGTGGCGCACGCTTTTGATCCCAGCACTTGGGAGGCA
GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT
TCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAA
AAAAAAAAGAGAGAGAGAGAGAATAGGGATTTTCTTCAAGCTCAGTACGT
GCCACTGTTTGTTGTTTTTTTTTTTTTTTTTGAGACAGGGTCTATTTATC
CCTGGTTGTCCTCTAACTTTATTCAGAAAGTTGTTCCTCTATTACCCCGT
GCTTTGAAGACAACTTCCTTCCTCTTTCCAGCCAGCGCCGAGCGATGGGC
ATCTCTCGGGACAACTGGCACAAGGGCCGCAAGAACGGGGTGGTGTGGCT
CTTTCTTTTTTCCTTTCATCTTTCTCTTTTCCCATACTTTCTCCCTTTTT
TTTCTTCTTTTACTATTATCCACTATTTTTCCTTTCCATCTTCTTCCATC
TTTTTTCTCCTCCGCCACCTTCTTTATCCCCCTCTGCTTTTTTGTCTTGC
TGCCCCCCTTTTCTCCTTTTCCTCTTCCCCCCTCCTTCCCCCCTTTTTTT
TTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_g18.b1 MSMg01no384_g18.b1 CHROMAT_FILE:
MSMg01no384_g18.b1 PHD_FILE: MSMg01no384_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:43 2005
         (476 letters)



>mm_chr1_135092540_135093415
          Length = 876

 Score =  890 bits (460), Expect = 0.0
 Identities = 466/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcagcgatccacctgcctctgcattctgattgctgggattagaggtacctggtgaaaaca 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcagcgatccacctgcctctgcattctgattgctgggattagaggtacctggtgaaaaca 662

                                                                       
Query: 69  ctttctatcacccagggaacctggttaaattccaggcccaagacagggggaagggaaggg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctttctatcacccagggaacctggttaaattccaggcccaagacagggggaagggaaggg 602

                                                                       
Query: 129 atgcaagcgtgaggaggctgcaggatgagggtgggggaggggctacagcatctcctcagc 188
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atgcaagcatgaggaggctgcaggatgagggtgggggaggggctacagcatctcctcagc 542

                                                                       
Query: 189 aggggcgtcaaatgttagaaaacaaacccaccagtgtttgctgacacgtgcaaagagaag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggggcgtcaaatgttagaaaacaaacccaccagtgtttgctgacacgtgcaaagagaag 482

                                                                       
Query: 249 gcctcacacaaaagccacacattatcccataattattgtctctctcatgcctgcaattaa 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcctcacacaaaagccacacattatcccataattattgtctctctcatgcctgcaattaa 422

                                                                       
Query: 309 cagctgtctgagaggcggctgctggggtaaataaatgttcacccccattacagtcaatca 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagctgtctgagaggcggctgctggggtaaataaatgttcacccccattacagtcaatca 362

                                                                       
Query: 369 gccagctgaagcgccaattaacaagcccactgcagagacacttggggacccagcagcaac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gccagctgaagcgccaattaacaagcccactgcagagacacttggggacccagcagcaac 302

                                                           
Query: 429 tgcgggaggaagtagatgggagaagatagcatgtgtcttgggtacgat 476
           ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 301 tgcgggaggaagtggatgggagaagatagcatgtgtcttgggtacgat 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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