Query= MSMg01no384_h05.b1 MSMg01no384_h05.b1 CHROMAT_FILE:
MSMg01no384_h05.b1 PHD_FILE: MSMg01no384_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:45 2005
(411 letters)
>mm_chr1_59723116_59723926
Length = 811
Score = 702 bits (363), Expect = 0.0
Identities = 366/367 (99%), Gaps = 1/367 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctgagactgtaaatattttcacagataattataatattcaattttagatggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggaattctctgagactgtaaatattttcacagataattataatattcaattttagatggt 308
Query: 64 gatttgtaggcaagttcacacatattattgtgcatcttaattttgtagttcaaaaaccgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gatttgtaggcaagttcacacatattattgtgcatcttaattttgtagttcaaaaaccgg 248
Query: 124 gtattactgtagtatatctttatttttatttattccttaatttattttggtttttcgaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtattactgtagtatatctttatttttatttattccttaatttattttggtttttcgaga 188
Query: 184 cagggtttctctgtgtatccctggctgtcctggaactcactgtgtagacctggctggcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cagggtttctctgtgtatccctggctgtcctggaactcactgtgtagacctggctggcct 128
Query: 244 cgaactcagaaatgcagcatatctttaaagagatgttgtgatccccttctctttctcctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cgaactcagaaatgcagcatatctttaaagagatgttgtgatccccttctctttctcctc 68
Query: 304 ttgactctttgcatttagttgcttttttggagttagtgaggctctgaaggaaaagaca-g 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 67 ttgactctttgcatttagttgcttttttggagttagtgaggctctgaaggaaaagacagg 8
Query: 363 aaggaag 369
|||||||
Sbjct: 7 aaggaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_h05.g1 MSMg01no384_h05.g1 CHROMAT_FILE:
MSMg01no384_h05.g1 PHD_FILE: MSMg01no384_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:45 2005
(486 letters)
>mm_chr1_59534150_59535034
Length = 885
Score = 901 bits (466), Expect = 0.0
Identities = 481/486 (98%), Gaps = 1/486 (0%)
Strand = Plus / Plus
Query: 1 agtagtgagaaccagaaccaagccagtctgctctggccacctctgcactcagcccgcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agtagtgagaaccagaaccaagccagtctgctctggccacctctgcactcagcccacacc 260
Query: 61 ttagtgccacacagagtggcactgagatgcaggtggcaattacctacagtgctgttacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtgccacacagagtggcactgagatgcaggtggcaattacctacagtgctgttacca 320
Query: 121 gatggcccaagtctctctcagactgtattgaaaaggctttgtcctctgaatgcagacagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gatggcccaagtctctctcagactgtattgaaaaggctttgtcctctgaatgtagacagg 380
Query: 181 gtccccatggagtgccttactccctgcacccagaggcttttcctagaactgtgtttgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccccatggagtgccttactccctgcacccagaggcttttcctagaactgtgtttgaga 440
Query: 241 aaagtcctccagggtcagggttctgttctgacagtaacagatactgtagccagtcagctc 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtcctccagggtcaggattctgttctgacagtaacagatactgtagccagtcagctc 500
Query: 301 tgtgttctcattcttgggccgcaaggccagcaggccaagagctgtttctctctgtgtcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgttctcattcttgggccgcaaggccagcaggccaagagctgtttctctctgtgtcct 560
Query: 361 cggctacacaactctctggcagaagaaataaccttcctcgtaatcaccttgagaagcact 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -ggctacacaactctctggcacaagaaataaccttcctcgtaatcaccttgagaagcact 619
Query: 421 ccaaacatccatccactgggatcttcacaccttgcttcatccctgttgcctcttaagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaaacatccatccactgggatcttcacaccttgcttcatccctgttgcctcttaagtga 679
Query: 481 gggtaa 486
||||||
Sbjct: 680 gggtaa 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
