XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAG
ACAGTGATTTCAACTGCCCACTAGTTCTGATTTCATATTTTATGTTATTA
AGCTACTGGGTTCAAAGTAAGGAGTATGGCTTTTCTTCCAAACAAAACAA
AACAAAAACACTTTTAATGCAATTACCCCTTTACATTTTAGTCTCTAAAG
TTTAAATTTGGGGGCCTGCCTTTTTGTATTTTGTAGCAGCTCCTTTACAT
TTAAGAATAGTGTAAGCACAGTTATAGCTTTAGGTAAAGCTTCTTAGTCT
GCAATTGGCACTGTCACTAACCTCTGGAGTGAAGTGTGTGGGAGGGAGGG
TGGGTTCCATCCCAATCGATCAGACTTAAACAAGACGCTAGGACTCATCT
GTAGGGAGGCTGCCTAGAATGCCAGGCCATCTTGTTTCTATAAACCACAT
TGCACTGCAGGATAATTCTCTAAGTGAAACTGTAAGCAATCTCCTTCTTA
AAAGATCCTAAAAGTTTTTATGCCATCTCTTTGGAACAAAATGGCTCTTA
TAAAAACCGATTTAATGACATATTTAAAACCTCCACATAATCCCATTAAA
TACAGGTTCAAAAAAAATAAAACCATAATATCTTTTTGTTATTTTAAAAA
CCAATTTCCCTTCCCGGCCGTGTAGCAAAAATTTCACTTATTCTTAAAGA
AGAAATAAAAAAATTTTATAGGTACCATTAATTTTAAACACAACATTTAT
ATATTTTTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTGAAACTAGATGTTCCTTGATGTAATGATTCTT
AAACAATTAAAAATTGAGGCATGGGACACAGCACAGCACAACATAGTCCT
AATGGCCCAGGTGCATGCTGTGTGTTCTCATCTTGGAAACAATGTAATAA
CTGCACAATGGTAGTTCCAGATTAATGCTTGATTTGCAAAGAAAGTTTGA
AGAAATTATTAGAAAATTAAATAGAGCCAACATTGGGACCCCAAGAAAGA
AAAAAAACTTTGAAATAAGTTATAAAATAAGTTTTGCACAACATGAGAGT
GGTTCCTGGATAAGCACATATAGGATATGTAAAATCTTATATTAGTAAAA
CTAAGTCAAACCACGGACTCTTAGGAGTATCATTGTATACAGAAGCAGAA
AGCTAGTGGAACTACTGAGTCAAGAGTTAACTTGATTCTTTCTGGCCACT
GCCTGGCAGCTTTTGTTCATGTCATTTATCATTAGAGCTTCACAGGAAAA
TGCATGTAGCTGGCCTCGGAGCTCTGAAGTATAATAAGCTAAAGTTTAAA
TAATGATAAACTGCAATTATTATTATTATTATTATTTTGGGTATAGCCCT
GGGAATAGGGAAACTTGAAACTTTGGGGAAAATTTGAATTTCTTGATTCT
TTGTGGAACGGGCTTATTCTTTTGAATTTAATTTGGCAAGAG

Query= MSMg01no384_h08.b1 MSMg01no384_h08.b1 CHROMAT_FILE:
MSMg01no384_h08.b1 PHD_FILE: MSMg01no384_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:45 2005
         (424 letters)



>mm_chr1_31003675_31004503
          Length = 829

 Score =  783 bits (405), Expect = 0.0
 Identities = 418/425 (98%), Gaps = 5/425 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagacagtgatttcaactgcccactagttctgatttcatattttatgttatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagacagtgatttcaactgcccactagttctgatttcatattttatgttatta 264

                                                                       
Query: 65  agctactgggttcaaagtaaggagtatggcttttcttccaaacaaaacaaaacaaaa--- 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 265 agctactgggttcaaagtaaggagtatggcttttcttccaaacaaaacaaaacaaaacaa 324

                                                                       
Query: 122 --acacttttaatgcaattacccctttacattttagtctctaaagtttaaatttgggggc 179
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacacttttaatgcaattacccctttacattttagtctctaaagtttaaatttgggggc 384

                                                                       
Query: 180 ctgcctttttgtattttgtagcagctcctttacatttaagaatagtgtaagcacagttat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcctttttgtattttgtagcagctcctttacatttaagaatagtgtaagcacagttat 444

                                                                       
Query: 240 agctttaggtaaagcttcttagtctgcaattggcactgtcactaacctctggagtgaagt 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctttaggtaaagcttctcagtctgcaattggcactgtcactaacctctggagtgaagt 504

                                                                       
Query: 300 gtgtgggagggagggtgggttccatcccaatcgatcagacttaaacaagacgctaggact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgtgggagggagggtgggttccatcccaatcgatcagacttaaacaagacgctaggact 564

                                                                       
Query: 360 catctgtagggaggctgcctagaatgccaggccatcttgtttctataaaccacattgcac 419
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catcagtagggaggctgcctagaatgccaggccatcttgtttctataaaccacattgcac 624

                
Query: 420 tgcag 424
           |||||
Sbjct: 625 tgcag 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 829
Length adjustment: 9
Effective length of query: 415
Effective length of database: 820
Effective search space:   340300
Effective search space used:   340300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)