XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTGCTCATGCCCTGAGGTGTATTGTGAAGCCAAAGAATGAAACCGCTTG
CTTGAGTTACAGGTCCATTTTTTTTCCTTAATTTGAGGCAAGTTGCAATC
TGTCTCTTATTTCCCAATTCTCATCACTGCATGAGATTCCTATGATATAA
CATCAGTACACTAAGATTTCCATGTAGAGCACTGAACTGACCACTGACAA
ATCTTTTTTTGCCTAATTTATACTCTTTCTGGTTACTCCATTGTCTTCAT
CTATCCCCCACTTTCCCCGCCTATTTGCTTTGCATGAATCCTCTTATAAA
CTGTATGAACAGGGGGAAGGCATCTTTTGATTTTAGAATGTAGCCACTTA
AATGACACAAAGAAGATTAAAGCTGATAAATTAATGTTTTACTAACTTTA
ATAAGTTAAAAATATGCAGGTAATCACATGTGCTCATAGATGAATAGTAA
AACAACCATGTCAACCTGCCCCAGACCTATTCTAGATTGAGCCTATCAAT
ATTCTGTCATGGAGCTGCAATTGGATTCTAGGCAGTTAACAGTGGCAGGT
GAGGGGAGGAGACTTTTTGTTTTCCAGTTGTGTCCTCACTGGTAAGTTGC
TCATGCTGTTGTAAATACCCCTGACACATGTTCCTATATGTAATTCTCAT
TAAACTTACTGGGCCACT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAACTTACTTTGCTAAGCTTGACTTGAG
ATTTCTAACTCTGTGTAGTAGATAGTAATGCCTGTTTTCTTTCACTATCT
CTCTTAGAATATTAGATGCAATTCTGAATGTTATTAAATAGGCAACATTC
TTACTGAATTCCAAGCCCATGGTCAGCTCAAGGACTACCTATGACATTGA
TGAAGGCCAGGAAGCAAAGTTCGATTTTGCTTAGGTATTTGGCAAGTCAT
TGCTTGGAGGCACCTATAACAAAACAATACTGAAAGGAAGCACACAGATC
CATTTGCAAGGACAAAATTGGAGTGTATGTGCTATGGAATGTCACAATAC
CAGGAGACTAAGTTTCCGTGAAACTCTTCATCTTGGGACTGCTTCCAGGT
TTCTCAACCTGTCAAGCAAGTCACTACTGGAGTGGATGTAGCAATTCTAT
CCTCCAAACTTTCCCATATACTCCTACCTGCTCTCCTTCAAATATTTTGC
CTTGTTTTTTTCCATCAATTATTATTGCATATATATATGTATATAAATAT
TACTAAATATAAAGTATTTATTCCATATAATGTTACTTGTAGTATATGTT
TTCAGGAATGGCACTTTGATACTGGANAACCAATTATTGTGCTCCTCCCT
GGGA

Query= MSMg01no384_l13.b1 MSMg01no384_l13.b1 CHROMAT_FILE:
MSMg01no384_l13.b1 PHD_FILE: MSMg01no384_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:04 2005
         (564 letters)



>mm_chr1_102046044_102047008
          Length = 965

 Score = 1046 bits (541), Expect = 0.0
 Identities = 556/561 (99%), Gaps = 1/561 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgctcatgccctgaggtgtattgtgaagccaaagaatgaaaccgcttgcttg 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gaattcagtgcacatgccctgaggtgtattgtgaagccaaagaatgaaaccgcttgcttg 706

                                                                       
Query: 65  agttacaggtcca-ttttttttccttaatttgaggcaagttgcaatctgtctcttatttc 123
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 705 agttacaggtccatttttttttccttaatttgagacaagttgcaatctgtctcttatttc 646

                                                                       
Query: 124 ccaattctcatcactgcatgagattcctatgatataacatcagtacactaagatttccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccaattctcatcactgcatgagattcctatgatataacatcagtacactaagatttccat 586

                                                                       
Query: 184 gtagagcactgaactgaccactgacaaatctttttttgcctaatttatactctttctggt 243
           |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 585 gtagagcactgaactgaccactgacaaatcattttttgcctagtttatactctttctggt 526

                                                                       
Query: 244 tactccattgtcttcatctatcccccactttccccgcctatttgctttgcatgaatcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tactccattgtcttcatctatcccccactttccccgcctatttgctttgcatgaatcctc 466

                                                                       
Query: 304 ttataaactgtatgaacagggggaaggcatcttttgattttagaatgtagccacttaaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttataaactgtatgaacagggggaaggcatcttttgattttagaatgtagccacttaaat 406

                                                                       
Query: 364 gacacaaagaagattaaagctgataaattaatgttttactaactttaataagttaaaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gacacaaagaagattaaagctgataaattaatgttttactaactttaataagttaaaaat 346

                                                                       
Query: 424 atgcaggtaatcacatgtgctcatagatgaatagtaaaacaaccatgtcaacctgcccca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgcaggtaatcacatgtgctcatagatgaatagtaaaacaaccatgtcaacctgcccca 286

                                                                       
Query: 484 gacctattctagattgagcctatcaatattctgtcatggagctgcaattggattctaggc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gacctattctagattgagcctatcaatattctgtcatggagctgcaattggattctaggc 226

                                
Query: 544 agttaacagtggcaggtgagg 564
           |||||||||||||||||||||
Sbjct: 225 agttaacagtggcaggtgagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space:   529070
Effective search space used:   529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)