Query= MSMg01no384_m02.b1 MSMg01no384_m02.b1 CHROMAT_FILE:
MSMg01no384_m02.b1 PHD_FILE: MSMg01no384_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:07 2005
(479 letters)
>mm_chr1_195255061_195255934
Length = 874
Score = 841 bits (435), Expect = 0.0
Identities = 463/475 (97%), Gaps = 5/475 (1%)
Strand = Plus / Plus
Query: 5 gaattcctacttatcctctgaaatatagctcagtattaggagataaacatcccacaaagg 64
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacttagcatctgaaatacagctcagtattaggagataaacatcccacaaagg 264
Query: 65 cccacaaattccactgtccttgggaaagatatgcctgctggcttgacatctctgaggtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccacaaattccactgtccttgggaaagatatgcctgctggcttgacatctctgaggtca 324
Query: 125 cacctgcaggccttctgtgagtggtagttttctttttctcttcccctttctaccattttc 184
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 325 cacctgcaggccttctgtgagtggtagttttctttttctcttcccccttctgccattttc 384
Query: 185 taggacttaagtctggggctttcaaacctaaggatagacactccgaactcaaacattttc 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 taggacttaagtctggggctttcaaacctaaggatagac-----gaactcaaacattttc 439
Query: 245 cttcaatggggttctgcaggggcaacaagacagcatccctgcatgtgggggcctcctcag 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 cttcaatggggttctgcaggggcaacaagacagcatccctgcatgcgggggcctcctcag 499
Query: 305 ccattgcactgctatttgccctgttttattggaaatcaatctcacgctcaacacaacaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccattgcactgctatttgccctgttttattggaaatcaatctcacgctcaacacaacaaa 559
Query: 365 cgtataaggaggacactgtttaggttcatcatctctgggatcaatgcctgtaatggttga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cgtataaggaggacactgtttaggttcatcatctctgggatcaatgcctgtaatggttga 619
Query: 425 acctaaacaagaaatagattgaaagggggagggaaaaggagaaatggaaggagag 479
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 acctaaacaagaaatagattgaaagggggagggaaaaggagaaatggaatgagag 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 874
Length adjustment: 10
Effective length of query: 469
Effective length of database: 864
Effective search space: 405216
Effective search space used: 405216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_m02.g1 MSMg01no384_m02.g1 CHROMAT_FILE:
MSMg01no384_m02.g1 PHD_FILE: MSMg01no384_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:07 2005
(534 letters)
>mm_chr1_195406867_195407800
Length = 934
Score = 975 bits (504), Expect = 0.0
Identities = 529/542 (97%), Gaps = 8/542 (1%)
Strand = Plus / Minus
Query: 1 ctatcagctagcagatgcagctgagtggcgggaaacagcacaagctgcccatatgaaagg 60
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 656 ctatcagctagcagatgcagccgagtggccggaaacagcacaagctgcccatatgaaagg 597
Query: 61 cataggcacttctagactaatcagtgctacgggaggcaccttgtggctgctttttaggcc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 catcggcacttctagactaatcagtgctacgggaggcaccttgtggctgctttttaggcc 537
Query: 121 tatgaggggcatagcatggaccataaaagaattttacatcattagagacacaacaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tatgaggggcatagcatggaccataaaagaattttacatcattagagacacaacaaccca 477
Query: 181 caactgatgggccactgagtcttcctctcttggcctctgattcctttcccacaaggatcc 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caactggtgggccactgagtcttcctctcttggcctctgattcctttcccacaaggatcc 417
Query: 241 ttctactaccctccagctaccctgagtttgcattcactgccttctgatgctccgtagtat 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttccactaccctccagctaccctgagtttgcattcactgccttctgatgctccgtagtat 357
Query: 301 ccctccactccccaatgacagaccctccagtatctatccctaccaccttctgacccctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccctccactccccaatgacagaccctccagtatctatccctaccaccttctgacccctga 297
Query: 361 aggacccctccacaaccctctgatgcactccaaagtatccctccccaaccctctgataag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aggacccctccacaaccctctgatgcactccaaagtatccctccccaaccctctgataag 237
Query: 421 cctcacagtacccctccccccat--------acacacacacacattctggtggccactga 472
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 236 cctcacagtacccctccccccatacacacacacacacacacacattctggtggccactga 177
Query: 473 gtaattctaagattctttctatgacttgttggggatctcagaaagagagtgtctttccta 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtaattctaagattctttctatgacttgttggggatctcagaaagagagtgtctttccta 117
Query: 533 ag 534
||
Sbjct: 116 ag 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
