BAC Information

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BAC

Clone NameMSMg01-384N21
Chromosome1 (Build37)
Map Location 49,111,261 - 49,263,399
singlet/doubletdoublet
Overlap gene2900045O20Rik, LOC666924
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream geneC230029F24Rik, LOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384N21.T7 (MSMg01no384_n21.b1)MSMg01-384N21.TJ (MSMg01no384_n21.g1)
ACCAG488202AG488203
length763770
length of high quality
(start - end)		494 (32 - 525)463 (63 - 525)
definitionCHROMAT_FILE: MSMg01no384_n21.b1 PHD_FILE: MSMg01no384_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:16 2005CHROMAT_FILE: MSMg01no384_n21.g1 PHD_FILE: MSMg01no384_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,262,930 - 49,263,399)(49,111,261 - 49,111,723)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAGTTAA
GAGCACATGTCACTCTTGCAGAAGACCAAGGTTCAGTTCTAAGCACCTAT
ATATCAGCTCACAACTCTGGCTCTAGGGGATATTATACCTACCATTTTCT
GATCTCCACTTCTTCATGCATGATCATGATGCACATATATTTATACTGCC
AAACACAAACTAAATCAAATATATAATAAATAAATATTTAAAATGTTTTA
TGTATCTTTTTACAGTTTTCAGTCACCAAAAAGGTCTTCACATGATATTT
TTTATCAAGAAAAGTTTGACTTTCAGTGTTGACAGTATACTGGAAAACAG
GTTTCCAGAATCCCACATATTGACTCTATCACTGGAAGAAAAATACGGTA
AAGTTACAGATAGTAAAAATGTTGTCTGCTTCTTTCTAGAGTCATTTTCA
TGAACTAATTGCTTCTTAAAAATATGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTAACACAATGTACATGTGCAAAGAATTGGGATTATATGCATTTGTG
ATTATCTTATGTAAATGCATAAAATCAGTGGGATTCCGGAAAACGAGCCA
CGAATAAATATTATGTAGGGATAACTATTAAAAAATGCGCCCTAATTGAT
GGAAATATGGAATCCCTGAAAAGGGGGCCCTGTGAACAAAACCGGTTTTG
TTCTACCCAAACAGGGTTCCTTGGTGAAAGAAAAATTGGACTGATATTCC
TCCCTCCTAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCAGTTAAGATATCAAAAACTATATATGAGAAACTAAA
GCAGAAAAATTGAACATCAAATTAACCATATTCTAAAGGAAAGCATGAGG
AAAATAAATACCTTCGACACAATTGGGATAATTGTGACAACTATGGAAAT
ATTCTAAGGCTGTGGTGATGATAGGTAATATCTGTGAATAGACTGGCTCA
TATATATAACTAAGTAACTGGCATTGTTTATGAATTACATTTTTTGTTTG
TTTGTTTTTTTGAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA
CTCACTTTGTAGACCAGGCTGTCCTCGCACTCAGAAATCTGCCTGCCTCT
GCCTCCCGAGGTGAATTATATTTTAATAAAGATATTATACTTTAAAAGGA
GAGAGAACGTTTATTCCAAGTAGAGGGTGATATATTGAGTGTAATATATA
TCGAGGAAATGGCAGTTCAATAGAATGTCAAAGAGAGAAGTGGAGCACAC
AAGGGATTGTATCAAAGAGCAAAATGTCACTATTTTATCCATTTAGCACT
GCATGCAGTCACAGGGAATAAGAGTTAGAGAAACTACAGGTTTTATTGTG
ACAACGTGTGTTAAATCTAAGTTATTAAACCGGTTAGGAAAACAAGGGTT
CCCAATGTTATCACCCGTACCCGCTCAAATGAAAACCTTGTTTATTTATG
GTAAAACCCCAAATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_n21.b1 MSMg01no384_n21.b1 CHROMAT_FILE:
MSMg01no384_n21.b1 PHD_FILE: MSMg01no384_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:16 2005
         (494 letters)



>mm_chr1_49262563_49263456
          Length = 894

 Score =  847 bits (438), Expect = 0.0
 Identities = 462/470 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtagttaagagcacatgtcactcttgcagaagaccaaggttcagttctaagca 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gaattcaatagttaagagcacatgtcactcttgcagaagaccaaggttcagttctaagca 778

                                                                       
Query: 65  cctatatatcagctcacaactctggctctaggggatattatacctaccattttctgatct 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 777 cctatatatcagctcacaactctggctctaggggatattatgcctaccattttctgatct 718

                                                                       
Query: 125 ccacttcttcatgcatgatcatgatgcacatatatttatactgccaaacacaaactaaat 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 717 ccacttcttcatgcatgatcatgatgcacatatgtttatactgccaaacacaaaccaaat 658

                                                                       
Query: 185 caaatatataataaataaatatttaaaatgttttatgtatctttttacagttttcagtca 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 657 caaatgtataataaataaatatttaaaatgttttatgtatctttttacagttttcggtca 598

                                                                       
Query: 245 ccaaaaaggtcttcacatgatattttttatcaagaaaagtttgactttcagtgttgacag 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ccaaaaaggtcttcgcatgatattttttatcaagaaaagtttgactttcagtgttgacag 538

                                                                       
Query: 305 tatactggaaaacaggtttccagaatcccacatattgactctatcactggaagaaaaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tatactggaaaacaggtttccagaatcccacatattgactctatcactggaagaaaaata 478

                                                                       
Query: 365 cggtaaagttacagatagtaaaaatgttgtctgcttctttctagagtcattttcatgaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cggtaaagttacagatagtaaaaatgttgtctgcttctttctagagtcattttcatgaac 418

                                                             
Query: 425 taattgcttcttaaaaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 474
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 417 taattgcttcttaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_n21.g1 MSMg01no384_n21.g1 CHROMAT_FILE:
MSMg01no384_n21.g1 PHD_FILE: MSMg01no384_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:16 2005
         (463 letters)



>mm_chr1_49111061_49111923
          Length = 863

 Score =  849 bits (439), Expect = 0.0
 Identities = 457/463 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagttaagatatcaaaaactatatatgagaaactaaagcagaaaaattgaacatcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttaagatatcaaaaactatatatgagaaactaaagcagaaaaattgaacatcaaat 260

                                                                       
Query: 61  taaccatattctaaaggaaagcatgaggaaaataaataccttcgacacaattgggataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaccatattctaaaggaaagcatgaggaaaataaataccttcgacacaattgggataat 320

                                                                       
Query: 121 tgtgacaactatggaaatattctaaggctgtggtgatgataggtaatatctgtgaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgacaactatggaaatattctaaggctgtggtgatgataggtaatatctgtgaataga 380

                                                                       
Query: 181 ctggctcatatatataactaagtaactggcattgtttatgaattacattttttgtttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggctcatatatataactaagtaactggcattgtttatgaattacattttttgtttgtt 440

                                                                       
Query: 241 tgtttttttgagatagggtttctctgtatagccctggctgtcctggaactcactttgtag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttgtttgagatagggtttctctgtatagccctggctgtcctggaactcactttgtag 500

                                                                       
Query: 301 accaggctgtcctcgcactcagaaatctgcctgcctctgcctcccgaggtgaattatatt 360
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 accaggctgtcctcgaactcagaaatctgcctgcctctgcctcccgaggtgacttatatt 560

                                                                       
Query: 361 ttaataaagatattatactttaaaaggagagagaacgtttattccaagtagagggtgata 420
           ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 561 ttaataaagatattatactttaaaaggggagagaaggtttattgcaagtagagggtgata 620

                                                      
Query: 421 tattgagtgtaatatatatcgaggaaatggcagttcaatagaa 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattgagtgtaatatatatcgaggaaatggcagttcaatagaa 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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