Query= MSMg01no385_b13.b1 MSMg01no385_b13.b1 CHROMAT_FILE:
MSMg01no385_b13.b1 PHD_FILE: MSMg01no385_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:34 2005
(592 letters)
>mm_chr1_194805551_194806542
Length = 992
Score = 1038 bits (537), Expect = 0.0
Identities = 564/573 (98%)
Strand = Plus / Minus
Query: 20 tctcagtgctgacgctgaatgagaggagggtgtgagtgtgctgttcctcaggtgcaggct 79
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tctcagtgctgatgctgaatgagaggagggtgtgagtgtgctgttcctcaggtgcaggct 733
Query: 80 gttgctaacactcgtttcagcagccagcaggctccgactcagagtatggtctctgccatc 139
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 732 gttgctaacactcgtttcagcagccaacaggctccgactcagagtatagtctctgccatc 673
Query: 140 agccaggtgccttattacacagacaatgacatagtgttctcttacgtgcagtgtacttct 199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agccaggtgccttagtacacagacaatgacatagtgttctcttacgtgcagtgtacttct 613
Query: 200 tgagggtgtggcactattatactgtgttttaaaagcaatttgatggattcccaagggttt 259
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 612 tgagggtgtggcactattatactgtgttttaaaagcaatttgatggatttccaagggttt 553
Query: 260 ccattacttcttgtattttactactaatggtttcactttatttgtttgcatggacttcag 319
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ccattacttcaagtattttactactaatggtttcactttatttgtttgcatggacttcag 493
Query: 320 aacaaaatttctgcagaagatacaagtccactcatatgcttttacatctctccataacct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aacaaaatttctgcagaagatacaagtccactcatatgcttttacatctctccataacct 433
Query: 380 aaagacaaaaggttttgacatttattaaaacttatttattttcacatttgaacacattat 439
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagacaaaaggttttgccatttattaaaacttatttattttcacatttgaacacattat 373
Query: 440 ttgtctgataaaatggcttctccttagtgtcagactgtctttataaccagaagagagcaa 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgtctgataaaatggcttctccttagtgtcagactgtctttataaccagaagagagcaa 313
Query: 500 tcttacaggcatcagttcattacagataaacacccagttagctttgattttatagttgag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcttacaggcatcagttcattacagataaacacccagttagctttgattttatagttgag 253
Query: 560 atttattttttagggcctcttctattgatgatt 592
|||||| ||||||||||||||||||||||||||
Sbjct: 252 atttatcttttagggcctcttctattgatgatt 220
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_b13.g1 MSMg01no385_b13.g1 CHROMAT_FILE:
MSMg01no385_b13.g1 PHD_FILE: MSMg01no385_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:34 2005
(550 letters)
>mm_chr1_194634343_194635293
Length = 951
Score = 1019 bits (527), Expect = 0.0
Identities = 545/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Plus
Query: 1 aacatatagagaatgtattgagactatcttcatgccagggtctgttttcacaactattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatatagagaatgtattgagactatcttcatgccagggtctgttttcacaactattcc 260
Query: 61 acaaataaacatgggggaaaggagtcctgaccccgactcctggataccaaatagtgaaaa 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaataaacatgggagaaaggagtcctgaccccgactcctggataccaaatagtgaaaa 320
Query: 121 gatggaagttctttgaacatctaagaaaagcatgtgtttaattggccaatattgtgaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggaagttctttgaacatctaagaaaagcatgtgtttaattggccaatattgtgaaat 380
Query: 181 g-atttgtatataaattgactctgtgttgtcatctctaaaggtgtcattccagcagggca 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatttgtatataaattgactctgtgttgtcatctctaaaggtgtcattccagcagggca 440
Query: 240 tggtggcatctgcaatcccagtgactgagaagctgggacagaaagatcaacgttcaacct 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tggtggcatctgcaatcccagtgactgagaagctgggacagaaagatcaaagttcaacct 500
Query: 300 agcctgcacaaacaggaagagcttgtcttaaaacagaaactaagccctggctcatgacta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctgcacaaacaggaagagcttgtcttaaaacagaaactaagccctggctcatgacta 560
Query: 360 ttatttccagcctttgggagatgggagcaggaggatgacgagttcaaggccaacctggcc 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttatttccagcctttgggagatgggagcaggaggatgacgagttcaaggctaacctggcc 620
Query: 420 tacatgagaccctgctaaggtttgaataaaaatgttcctgtgaacgcatgtatttgacat 479
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 621 tacatgagaccctgctaaggtttgaattaaaatgttcccgtgaacgcatgtatttgacat 680
Query: 480 ttggtccccagctcatgttgctgtttgcagagcatatggagcctcttcgatggaggtaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggtccccagctcatgttgctgtttgcagagcatatggagcctcttcgatggaggtaga 740
Query: 540 gccttgacgga 550
|||||||||||
Sbjct: 741 gccttgacgga 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
