BAC Information

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BAC

Clone NameMSMg01-385D24
Chromosome1 (Build37)
Map Location 160,764,387 - 160,923,139
singlet/doubletdoublet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385D24.T7 (MSMg01no385_d24.b1)MSMg01-385D24.TJ (MSMg01no385_d24.g1)
ACCAG488494AG488495
length741735
length of high quality
(start - end)		545 (35 - 579)313 (61 - 373)
definitionCHROMAT_FILE: MSMg01no385_d24.b1 PHD_FILE: MSMg01no385_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:46 2005CHROMAT_FILE: MSMg01no385_d24.g1 PHD_FILE: MSMg01no385_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,764,387 - 160,764,927)(160,922,844 - 160,923,139)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCAA
TTCACTTTAACTGCTAACTCTAGCACTTCTACAATAATACTTTAAATAAA
AATTACTCCCCACTGGCCTGTTATACGCAAACGGTATCAATAAATGTGGA
CTCAAAGAAGTTAAGTAATTTGTCCAAACTCATATACTAAAGGTAATAGC
AGTGGGTCCAGCTGTGTAATTCAGACTTTCTGATCTCTTATATTGTTGCC
TTTTATCCATTTACACTAACCTTCACCGCACGTAGAGACCAAACATAGTT
TATGTTAAACTTCAAGGTTCTTGCATATGCCTTGAGCTACATGATTGACA
TTATTGAGGTCGAGTATTGTACACGAGAAGTCCTGGATTTTATAACTACA
CTAGAAGGTTCTCAGCTAACATTATCTTTTTCTGAACTTCGTGGGGGCAA
AAAGGGATGATAACATCTTGGATAAAGTGCAAGCTCCAAAACATCCAGAC
AGCCATGACTCCATTCTTCTGGCTTAACTTACCATTGAATGAGGTTCTCC
TATTACCAGGGAAACAGGACATTTCTCCTTGTCTTCATGGGANGAATAAA
GCTGGCTANGCCACTGATCCAAATATCCTTCAGGAGTGTGGAGGGCACAG
TCTGTGATGATGCTTTCTTTCTCAAAACTTACAAAACCCATCTCCCTCTT
ACTGTAAAAAAGGGTTTCTCCCCTTGCAAAAATGAAAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTGAGTAGTAATGAGATTCCTCTCTGCTCAAAACAGTGAT
GCCCTCCTACACAGCACCATTCCAGCCAGCTCCTGGGTCCGGCATGTGCC
AGGTGGTCAAGCTTTATACCCAGGGATTTCAATTTCTGATGGTCTAAAGG
TACCACTTCCCAGCTTGCCGTTAGTTTCCAAGTTGGCTATTCACATCTTA
CTAGGGCTCATGAGGGCTGCTTTTCTGCCAGTACCCCACTGTCTGTGCCT
GTGTATGCTTGTGCTCAGACCAGTCAAGTCCTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTNTNNNNNNNNNNTTTNTNTTTTTTTTTTTT
TTNNNTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTNTNTTTTTTTTTTTTTTTTTTT
TTNTTTTTNNTTTTNTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTNTTTTTTTTCTTTTTTNTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_d24.b1 MSMg01no385_d24.b1 CHROMAT_FILE:
MSMg01no385_d24.b1 PHD_FILE: MSMg01no385_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:46 2005
         (545 letters)



>mm_chr1_160764183_160765127
          Length = 945

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcaattcactttaactgctaactctagcacttctacaataatactttaaata 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcatttcactttaactgctaactctagcacttctacaataatactttaaata 264

                                                                       
Query: 65  aaaattactccccactggcctgttatacgcaaacggtatcaataaatgtggactcaaaga 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 aaaattactccccactggcctgttatacgcaaacagtatcaataaatgtggactcaaaga 324

                                                                       
Query: 125 agttaagtaatttgtccaaactcatatactaaaggtaatagcagtgggtccagctgtgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agttaagtaatttgtccaaactcatatactaaaggtaatagcagtgggtccagctgtgta 384

                                                                       
Query: 185 attcagactttctgatctcttatattgttgccttttatccatttacactaaccttcaccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 attcagactttctgatctcttatattgttgccttttatccatttacactaaccttcacca 444

                                                                       
Query: 245 cacgtagagaccaaacatagtttatgttaaacttcaaggttcttgcatatgccttgagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacgtagagaccaaacatagtttatgttaaacttcaaggttcttgcatatgccttgagct 504

                                                                       
Query: 305 acatgattgacattattgaggtcgagtattgtacacgagaagtcctggattttataacta 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatgattgacattgttgaggtcgagtattgtacacgagaagtcctggattttataacta 564

                                                                       
Query: 365 cactagaaggttctcagctaacattatctttttctgaacttcgtgggggcaaaaagggat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactagaaggttctcagctaacattatctttttctgaacttcgtgggggcaaaaagggat 624

                                                                       
Query: 425 gataacatcttggataaagtgcaagctccaaaacatccagacagccatgactccattctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gataacatcttggataaagtgcaagctccaaaacatccagacagccatgactccattctt 684

                                                                       
Query: 485 ctggcttaacttaccattgaatgaggttctcctattaccagggaaacaggacatttctcc 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 ctggcttaacttaccattgaatgaggttctcctgttaccagggaaacaggacatttctcc 744

            
Query: 545 t 545
           |
Sbjct: 745 t 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_d24.g1 MSMg01no385_d24.g1 CHROMAT_FILE:
MSMg01no385_d24.g1 PHD_FILE: MSMg01no385_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:46 2005
         (313 letters)



>mm_chr1_160922669_160923381
          Length = 713

 Score =  526 bits (272), Expect = e-154
 Identities = 290/296 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagtagtaatgagattcctctctgctcaaaacagtgatgccctcctacacagcaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 471 ctgagtagtaatgagattcctctctgctcaaaacagtgatgccctcctacacagcgccat 412

                                                                       
Query: 61  tccagccagctcctgggtccggcatgtgccaggtggtcaagctttatacccagggatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tccagccagctcctgggtccggcatgtgccaggtggtcaagctttatacccagggatttc 352

                                                                       
Query: 121 aatttctgatggtctaaaggtaccacttcccagcttgccgttagtttccaagttggctat 180
           |||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 351 aatttccgagggtctaaaggtaccacttcccagcttgcagttagtttccaagttggccat 292

                                                                       
Query: 181 tcacatcttactagggctcatgagggctgcttttctgccagtaccccactgtctgtgcct 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 tcacatcttactagggctcatgagggctgcttttctaccagtaccccactgtctgtgcct 232

                                                                   
Query: 241 gtgtatgcttgtgctcagaccagtcaagtcctgtgtgtgtgtgtgtgtgtgtgtgt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtgtatgcttgtgctcagaccagtcaagtcctgtgtgtgtgtgtgtgtgtgtgtgt 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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