Query= MSMg01no385_h04.b1 MSMg01no385_h04.b1 CHROMAT_FILE:
MSMg01no385_h04.b1 PHD_FILE: MSMg01no385_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:01 2005
(428 letters)
>mm_chr1_90153741_90154566
Length = 826
Score = 793 bits (410), Expect = 0.0
Identities = 420/424 (99%), Gaps = 2/424 (0%)
Strand = Plus / Plus
Query: 5 gaattccatcctgtgacaggggaggcgttccagtgattcattggggctcacctcattctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcctgtgacaggggaggcgttccagtgattcattggggctcacctcattctt 264
Query: 65 ttggcagcacctctggagactagtgctgggcaggcaatggagtgtgttcaaattccacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggcagcacctctggagactagtgctgggcaggcaatggagtgtgttcaaattccacat 324
Query: 125 aaacccttatgcatgcctttggggtaaaccccctcccccctgagctagagtcattatgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacccttatgcatgcctttggggtaaaccccctcccccctgagctagagtcattatgcc 384
Query: 185 cagtctcttgagtgttacaagtcttacaaggaaggagggactgccctgatggaaggatcc 244
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 385 cagtctcttgagtgttacaagtct--cgaggaaggagggactgccctgatggaaggatcc 442
Query: 245 agacagcttggtggaaacctaggaattgggattgaccatggggaatggctggggttttgc 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agacagctcggtggaaacctaggaattgggattgaccatggggaatggctggggttttgc 502
Query: 305 tgggcttcctgatggcagcccacttgtgcctcttgatgtcaggaaagcgagctgctacgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgggcttcctgatggcagcccacttgtgcctcttgatgtcaggaaagcgagctgctacgg 562
Query: 365 ttgaaggcctttgttctctttgggaagcttacaaaagtggttgggatttccaagaagcat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgaaggcctttgttctctttgggaagcttacaaaagtggttgggatttccaagaagcat 622
Query: 425 ttct 428
||||
Sbjct: 623 ttct 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 826
Length adjustment: 9
Effective length of query: 419
Effective length of database: 817
Effective search space: 342323
Effective search space used: 342323
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_h04.g1 MSMg01no385_h04.g1 CHROMAT_FILE:
MSMg01no385_h04.g1 PHD_FILE: MSMg01no385_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:01 2005
(398 letters)
>mm_chr1_90299846_90300641
Length = 796
Score = 743 bits (384), Expect = 0.0
Identities = 394/398 (98%), Gaps = 2/398 (0%)
Strand = Plus / Minus
Query: 1 aggctttaagctgcattttgtgtaaagacctggcaatctgagaagtcagtggattaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aggctttaagctgcattttgtgtaaagacctggcaatctgagaagtcagtggattaacac 537
Query: 61 cctaaaaaaacctcctgccttcacattccagccagcagattatacagggagaatcaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cctaaaaaaacctcctgccttcacattccagccagcagattatacagggagaatcaggag 477
Query: 121 gcgagggggaaacggaggtggttagccatcccggagctcagtcttggctctctgatcaag 180
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gc--gggggaaaccgaggtggttagccatcccggagctcagtcttggctctctgatcaag 419
Query: 181 ggatgtctctggggcttgtgatgtctgtctcttgtgatcacctctttgcactcttccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggatgtctctggggcttgtgatgtctgtctcttgtgatcacctctttgcactcttccctc 359
Query: 241 atgctctggatgtgtgggagcagacattcctcacattgctgagtgtagttaatgtgtgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgctctggatgtgtgggagcagacattcctcacattgctgagtgtagttaatgtgtgct 299
Query: 301 agcaccaacatatactcctctagggcatctgggatggaggagggttaactctaaacaagc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agcaccaacatatactcctccagggcatctgggatggaggagggttaactctaaacaagc 239
Query: 361 cattaacagtgtctgtgctgagctagtcacatgtgtgt 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cattaacagtgtctgtgctgagctagtcacatgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 796
Length adjustment: 9
Effective length of query: 389
Effective length of database: 787
Effective search space: 306143
Effective search space used: 306143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
