Query= MSMg01no385_i18.b1 MSMg01no385_i18.b1 CHROMAT_FILE:
MSMg01no385_i18.b1 PHD_FILE: MSMg01no385_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
(515 letters)
>mm_chr1_42736749_42737662
Length = 914
Score = 919 bits (475), Expect = 0.0
Identities = 502/511 (98%), Gaps = 1/511 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgttcatagcattcaggcctttcctttctatttgttactaaaaacaaaaaca 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaattcattgttcatagcattcaggcctttcctttctatttgttactaaaaacaaaaaca 655
Query: 65 aaaagcaaacaaacaaaaaaaccatcctgaaaactgtgcaatctaagttagctcttctaa 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaaagcaaacaaac-aaaaaaccatcctgaaaactgtgcaatctaagttagctcttctaa 596
Query: 125 gtaaatttggaagattgggactaagtgtcagccatcccgcaatgcttctttctagcaacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtaaatttggaagattgggactaagtgtcagccatcccgcaatgcttctttctagcaacg 536
Query: 185 ttggcagagatggacatagggccctgtacagaattgagatcctcgtgcctgtgaacattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttggcagagatggacatagggccctgtacagaattgagatcctcgtgcctgtgaacattt 476
Query: 245 actcctatttacataaagggacttgaggggcccactttaccaggctttaccatggctgct 304
|| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 475 acccctatttacataaagggacttgaggggcccactttaccaggctttcccaaggctgct 416
Query: 305 cattgaactgttaggtatctggtcacctacttacttggactcagcagagtcacgcacaca 364
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct: 415 cattgaactgttaggtatctggtcacctatttacttggactcaggagagtcacgtacaca 356
Query: 365 tcataggatgcttcgatagtaaagagcctagctgggaatatgaagattgtttacattatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcataggatgcttcgatagtaaagagcctagctgggaatatgaagattgtttacattatt 296
Query: 425 aagctgtgaatgatgttagtgttttacacgtaatgagttagggtctccttggatgatctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagctgtgaatgatgttagtgttttacacgtaatgagttagggtctccttggatgatctg 236
Query: 485 tcttggagacaattgtcgaacaagtcttcta 515
|||||||||||||||| ||||||||||||||
Sbjct: 235 tcttggagacaattgttgaacaagtcttcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space: 456520
Effective search space used: 456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_i18.g1 MSMg01no385_i18.g1 CHROMAT_FILE:
MSMg01no385_i18.g1 PHD_FILE: MSMg01no385_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
(496 letters)
>mm_chr1_42568363_42569258
Length = 896
Score = 951 bits (492), Expect = 0.0
Identities = 495/496 (99%)
Strand = Plus / Plus
Query: 1 tctgtttctaatctatagcatctgcccactgtgggactaaggacctaacatctcccccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtttctaatctatagcatctgcccactgtgggactaaggacctaacatctcccccag 260
Query: 61 gacctaacaaaggacaagcagggtaagagatgtatgctcagaccgctccactattcctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctaacaaaggacaagcagggtaagagatgtatgctcagaccgctccactattcctcg 320
Query: 121 gcagaagtaatgaggcttggtgctaacgcttttctctagcatgtgtaagactttggagat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gcagaagtaatgaggcttggtgctaacgcttttctctagcatgtgtaagactctggagat 380
Query: 181 gcccagcaccaaacaaacaagatactcagagtcagaaggcccttgcagagataaccaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccagcaccaaacaaacaagatactcagagtcagaaggcccttgcagagataaccaagc 440
Query: 241 gacctagaaaacaaagatgtgaactctagttccaagctccaggtcaacactttgatgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacctagaaaacaaagatgtgaactctagttccaagctccaggtcaacactttgatgaga 500
Query: 301 catgcgtggggcatgcacgagacaacagctcacaacccgcagctcagaagagaatgtatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgcgtggggcatgcacgagacaacagctcacaacccgcagctcagaagagaatgtatc 560
Query: 361 gctgtatccagactcaaaactctcctgatcagtatgccttaaccagagttcctggtagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtatccagactcaaaactctcctgatcagtatgccttaaccagagttcctggtagag 620
Query: 421 actttaaatctaaactcttagattccggttcagttccttcatagtcctgtcttaagccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actttaaatctaaactcttagattccggttcagttccttcatagtcctgtcttaagccac 680
Query: 481 ctgtagtctctgactt 496
||||||||||||||||
Sbjct: 681 ctgtagtctctgactt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
