XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTACTT
TCTGATATAGTTTTTTATATTCCACCCTTTTCTAAACAAAAGGAAATTGG
CCAAGTTACAAAATGACTAAAGAATAAGCAATATTTTTCCTTCTGCCTCT
GGCAAAATCTTAATTTCTTTCTTTAGGGTCAGGAGACTTGCCAACATGAA
AAAGTTACATTTGCACTATGTGGCGAATGCCCTTTGGAATCCTTTGACTC
TAGCACAGGCTGCACATGAGTTACGGATACTGAGGGGAGCCATTGGTGTA
AAGTCGGACTCTACTGTAAACGCTCACAAGTTCAAAGCCACCCCCTGCTA
GTACTAAGCTTGAGTATTACTTCTTAATATGCCTCCTTCCTTTCCATGTC
ATCTATGGAGTCTCAAAGGTGCCAAAATGGACCCCTGCAAGTAACTCAAA
TCTGGAAGGAAAATTAGTTGTCCTGGCCAATTCTGATTTGCCGCCATCAT
GTTCTGAAGGTTTCCCAACGAGAGCTGCAAATGTTCAGATGCCAAATTCC
TTGCATCTTTTATCATTGTTCATGGGAAAAGAACTGGTGTGGGGTTCTTC
ATCTTTCATGGATAAATGCATGCANGAGATGGAACTGGGAGCCTGTATTT
TCTACTATAAAAGGACTGCCAGGGAAAGACATGTTGAAGAAACTAACAGC
CAATTCTTCTACAGAGGCTTTTTGCTTTATAAAAAAAAAATGTTTCCTGC
CGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTTCCTCAAGAAGGAGGGTCCTTCTGTACTGGGTGAA
GCTTGTGCACAGGACCTCAAAGACCACCCCACAGTGATATACTTCTTCCA
ACAAGACCACACCTCCTAATAATAGCCCTTCCCATGTGCCAAGCATATTC
AAACCACCACAGGCAGTGAGGCTTGATGCGGTACAAGAGGGGGATGTAGG
GTGGGAACAGGGAAGATCGGTCCTTACTAGTGCCTCCCATGGGAATTTTG
AAATTAATTTTTTTCAATTTCTGTGAAAAATGGTGTTAGAGTTTTGATTG
AGATTCCTTCCATTAGATCTGTAAATTGCTTCTGGTAGGATGGTCATTTT
CACAATATTAATCCTATCAGTCTGTGAACATTGGAGGTCTTTCCATCTTC
TGGTATCATCGTCAATTTCTTTCAGTATCTTGAAGTTTTTGTTGTATACA
TCTCTCTTCCCTGGTTAGATTTATTATAAAAGGATTTGTTTTGGTTTTGA
GGTTGTTGAAAACGAAGTTGTTGCTCTTATTTCTCTCTGGGATGTCTGAT
GTTAAAAAAAGGCAGCCTACTAATTTTTTTTTCCAAAAAGGGGGTATCTG
GTTAACTCTGGTTGCCCTGGAACTCACTTGTAAAAAAGGTGGGCCTGGAA
ACAAAAAATGGGGGGCCTCACCCCCAGGGGGGGGAAAAAAAGAGGGGCCA
N

Query= MSMg01no385_k21.b1 MSMg01no385_k21.b1 CHROMAT_FILE:
MSMg01no385_k21.b1 PHD_FILE: MSMg01no385_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:19 2005
         (497 letters)



>mm_chr1_34392413_34393309
          Length = 897

 Score =  915 bits (473), Expect = 0.0
 Identities = 488/493 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtactttctgatatagttttttatattccacccttttctaaacaaaaggaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtactttctgatatagttttttatattccacccttttctaaacaaaaggaaat 264

                                                                       
Query: 65  tggccaagttacaaaatgactaaagaataagcaatatttttccttctgcctctggcaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggccaagttacaaaatgactaaagaataagcaatatttttccttctgcctctggcaaaa 324

                                                                       
Query: 125 tcttaatttctttctttagggtcaggagacttgccaacatgaaaaagttacatttgcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttaatttctttctttagggtcaggagacttgccaacatgaaaaagttacatttgcact 384

                                                                       
Query: 185 atgtggcgaatgccctttggaatcctttgactctagcacaggctgcacatgagttacgga 244
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 atgtggtgaatgccctttggaatcctttgactctagcataggctgcacatgagttacgga 444

                                                                       
Query: 245 tactgaggggagccattggtgtaaagtcggactctactgtaaacgctcacaagttcaaag 304
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 445 tactgaggggagccattggtgtaaagtcggactctactgtaaatgctcacgagttcaaag 504

                                                                       
Query: 305 ccaccccctgctagtactaagcttgagtattacttcttaatatgcctccttcctttccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaccccctgctagtactaagcttgagtattacttcttaatatgcctccttcctttccat 564

                                                                       
Query: 365 gtcatctatggagtctcaaaggtgccaaaatggacccctgcaagtaactcaaatctggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcatctatggagtctcaaaggtgccaaaatggacccctgcaagtaactcaaatctggaa 624

                                                                       
Query: 425 ggaaaattagttgtcctggccaattctgatttgccgccatcatgttctgaaggtttccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaaaattagttgtcctggccaattctgatttgccgccatcatgttctgaaggtttccca 684

                        
Query: 485 acgagagctgcaa 497
           |||||| ||||||
Sbjct: 685 acgagacctgcaa 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)