XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGTGCT
AGTAATCTCAGTATAGTGTAGCAATGGCAGAGAAAATAGAATCCAAGGAG
TTTTCTGATAAGCCTAACCGAAATCACTCTTCCTAGGCACTAGTTAATAT
TGAAAGACAACTGTAGTTTCCCTCTGTCCTCTGCATGCATTTATGTTAGC
CATATACAAGTACACACACACACACACACACACACACACACACACACACA
CACACACACGTATATATATTCAACAAACTCCAACCACAAAATGCATGTGT
GTGTACCATGAAGGTTTACCTGTATTTGCACATTCCTGAGATCTTCTGGC
GAGCATGCCTCTGATACCCATCACAATTATGAAGGATGCCATTAGAAGAG
AAACAGTTTGTCATGTGGTTTAAGTTTCATATACTGGAACACAATCATGG
CAACAGGAATGTTGGGATATAATGTTGATGCTTAAGACATGGGCCTAGAG
GAAGGTTCCTTGGAGCTACAGTAGGCAAAGTTTTTATCAGCAGTTCTGGG
TTCGCTGTGCTTTCATGAGAACTTCACTGTTCTGAAAGAAGTCAACTGCT
CCATGAATCACTAGATTTTTATTCTTTTTTGAAGAAATTTAACTAATTTT
ATTTTTTGNTCCCCCCCTCCCTTTCCCTGGAGATTTTCCGAAACCCTCCC
CGATATTAATAAGAAAGAAATACCCTCCCCCCNTTCTCTTTTTACCTCCC
AA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCATTTAGTTCTACATACCATCTTTTTGATTGGGTT
TTTTGTTTATTTATTTATTTTTGGTGATAACTTCTTGAGTTATTTATATA
TTTTGGATATTAGCCCTCTATTGGATGTGGGGTTAGTGAAGATTTTAACA
ATCTGTAGGTTGCTGATTTATCTTATTGACTCTGTACTTTGCCTTGCAGA
AGTTTTCCAGTTTCAGGATGTCCAATTTATCAATTCTTGATCTTAGAATA
TGAGCCATTCAAGTTTTGTTTAGAGATCAGGTGGGGTAGGGAGTGGGGGT
ATCCACGTGGAGACAGGGTGGGTTGGGGAGNATGTATGGGATGTATAAGG
AGTGAATGTTATAATGGATTGTTTTAGTTTATATATGTGTTTTTTTTTAA
TTATTTTTTTTTTTATTCAGGGGAGTGTTATTTTCCTCTTTTCTCTTCCT
CTTTTTTCTCTCCCGTTGTTTTTCTCCTTTTTCTCTCTTTTTTCTCTTTG
TCTTTCTCTTATATCTCATTGTTCCGCCTGTTTTTATTTGTTTTGCATTT
TTTACCCTTCCCCCTTTTCTCCCTCCTTTTCCCGCTTTTTTTTTTTCTTT
TTCCGCTCTTTCCCCCCCCCTTTCTTTTTTTTCCTTTATCGTCCTCCTCG
TAAGATTTACTCTTTACCATCCCTTTTGCCTCTCCCCTG

Query= MSMg01no385_n18.b1 MSMg01no385_n18.b1 CHROMAT_FILE:
MSMg01no385_n18.b1 PHD_FILE: MSMg01no385_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:32 2005
         (464 letters)



>mm_chr1_27909240_27910103
          Length = 864

 Score =  623 bits (322), Expect = 0.0
 Identities = 386/438 (88%), Gaps = 48/438 (10%)
 Strand = Plus / Minus

                                                                       
Query: 75  ataagcctaaccgaaatcactcttcctaggcactagttaatattgaaagacaactgtagt 134
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ataagcctaacagaaaacactcttcctaggcactagttaatattgaaagacaactgtagt 805

                                                                       
Query: 135 ttccctctgtcctctgcatgcatttatgttagccatatacaagtacacacac-------- 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 804 ttccctctgtcctctgcatgcatttatgttagccatatacaagtacacacacacacacac 745

                                                                       
Query: 187 ----------acacacacacacacacacacacacacacacacacacacac---------- 226
                     ||||||||||||||||||||||||||||||||||||||||          
Sbjct: 744 acacacacaaacacacacacacacacacacacacacacacacacacacacagacacacac 685

                                                                       
Query: 227 --------------------gtatatatattcaacaaactccaaccacaaaatgcatgtg 266
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acacacaaacaaacacacatgtatatatattcaacaaactccaaccacaaaatgcatgtg 625

                                                                       
Query: 267 tgtgtaccatgaaggtttacctgtatttgcacattcctgagatcttctggcgagcatgcc 326
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 tgtgtaccatgaaggtttacctgtatttgctcattcctgagatcttctggcgagcatgcc 565

                                                                       
Query: 327 tctgatacccatcacaattatgaaggatgccattagaagagaaacagtttgtcatgtggt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctgatacccatcacaattatgaaggatgccattagaagagaaacagtttgtcatgtggt 505

                                                                       
Query: 387 ttaagtttcatatactggaacacaatcatggcaacaggaatgttgggatataatgttgat 446
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 ttaagtttcatatactggaacacaatcatggcaacaggaatgttgggatatagtgttgat 445

                             
Query: 447 gcttaagacatgggccta 464
           ||||||||||||||||||
Sbjct: 444 gcttaagacatgggccta 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)