AATGCCGACGCGGGGNGGAANTCAAGGCCCTTACAACACCAAGATAAAAG
CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTG
GAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCC
CTACCTTTTCAACATAGTACTTGAAGTATTAGCTAGAGCAATTCGACAAC
AAAAGGAGATCAAGGGGATACTAATTGGAAAAGAGGAAGTCAAAATATCA
CTTTTTGCAGATGATATGATAGTATATATAAGTGATTCNAATAAACTACC
AGAGAACTCCTAAACCTGATAAACAGCTTTGTTGAAGCACCTGGCCATAA
AATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGG
CTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAAT
ATAAAATATCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTATGA
TAAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGAT
GGAAAGATCTCCCATGCTCATGGATTGTCGGGATCAACATTGTAAAAATG
GCTATTTTGCCAAAAGCAATCTATTTATTCTTTGTCATCCCCATCAAAAT
TCCAACTCAATTCTTCAACGAATTGGAAGGAGTAATTTGCAAATTG

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGTACTTGTGAGATAGTCCCCCCCA
AAATAAGTGTCTTGATACTTTAGTTTCTTTAAAACACATAATTGTTCTTG
GAACATATTTTTTATGCTCCACCCAGGAATAAAAGATAGGAGTGAGTTTA
CCTCCTATCTTTTTGTTCATTACTATTTGCTATTACTATTTGGTATATGT
CTTTACAGAAAAAACATTTTTGGCCACATCTATCTGTTAGATGCAGCTTG
TTTACCATAAGATGTTTGCTCATGGGATGATAGACTTTAATCATGTGACT
CTTTTTAGTCCCAGGATATACTTATCTTATGCTCTGAATAAAATTGGCTT
TTGCATGAGACTTTACCCATCCTAACTTTATGCCTATCTCTACCATTTCC
CACTGCCTGTTAGAAAAGTAAACAAGGGACATACAGAACTATGATCTGAG
GTGGCTATGAGCTAATAGATTGAGGACCCTCATAGAAGGAGCTGAGAAAA
TGGGGCAGAAACCAGGGAAGACTGCTTAAGTTCAAGACTGTTGATCAATT
TTATAGAAAGGAAGAACATACATATTAAAATTACAACTACTAATTTGCTG
CTAATTGTATATGATTCTAAATGAAGGAGTATAGGAATGACTCTGACAGA
ATATTGGAAAGTTACATAAGCAAGGTA

Query= MSMg01no386_h08.g1 MSMg01no386_h08.g1 CHROMAT_FILE:
MSMg01no386_h08.g1 PHD_FILE: MSMg01no386_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:16 2005
         (542 letters)



>mm_chr1_110763380_110764326
          Length = 947

 Score =  841 bits (435), Expect = 0.0
 Identities = 519/549 (94%), Gaps = 9/549 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtacttgtgagatagtcccccccaaaataagtgtcttgatacttta-gtttctttaa 59
           ||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| |
Sbjct: 747 acagtacttgtgagatagt-ccccccaaaataagtgtcttgatgcttcaggttt-tttta 690

                                                                       
Query: 60  aacacataattgttcttggaacatattttttatgctccacccaggaataaaagataggag 119
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aacccataattgttcttggaacatattttttatgctccacccaggaataaaagataggag 630

                                                                       
Query: 120 tgagtttacctcctatctttttgttcattactatttgctattactatttggtatatgtct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgagtttacctcctatctttttgttcattactatttgctattactatttggtatatgtct 570

                                                                       
Query: 180 ttacagaaaaaacatttttggccaca----tc-tatctgttagatgcagcttgtttacca 234
           ||||||||||||||||||||||||||    || ||||||||| ||||||||||||| |||
Sbjct: 569 ttacagaaaaaacatttttggccacatgtgtcttatctgttatatgcagcttgtttccca 510

                                                                       
Query: 235 taagatgtttgctcatgggatgatagactttaatcatgtgactctttttagtcccaggat 294
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct: 509 taagatgtttgctcatgggatgatagactttaatcttttgactctttttagtcccagaat 450

                                                                       
Query: 295 atacttatcttatgctctgaataaaattggcttttgcatgagactttacccatcctaact 354
           |||  ||||||||| ||||||||||||||||| |||||||||||||||  |||||| |||
Sbjct: 449 ataaatatcttatgatctgaataaaattggctattgcatgagactttagtcatccttact 390

                                                                       
Query: 355 ttatgcctatctctaccatttcccactgcctgttagaaaagtaaacaagggacatacaga 414
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 389 ttatgcctatctctaccatgtcccactgcctattagaaaagtaaacaagggacatacaga 330

                                                                       
Query: 415 actatgatctgaggtggctatgagctaatagattgaggaccctcatagaaggagctgaga 474
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actatgatctaaggtggctatgagctaatagattgaggaccctcatagaaggagctgaga 270

                                                                       
Query: 475 aaatggggcagaaaccagggaagactgcttaagttcaagactgttgatcaatttt-atag 533
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 269 aaatggggcagaaaccagggaagactgcttaagatcaagactgttgatcaatttttaaag 210

                    
Query: 534 aaaggaaga 542
           |||||||||
Sbjct: 209 aaaggaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 947
Length adjustment: 10
Effective length of query: 532
Effective length of database: 937
Effective search space:   498484
Effective search space used:   498484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)