BAC Information

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BAC

Clone NameMSMg01-386J08
Chromosome1 (Build37)
Map Location 12,357,594 - 12,358,087
singlet/doubletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386J08.T7 (MSMg01no386_j08.b1)MSMg01-386J08.TJ (MSMg01no386_j08.g1)
ACCAG489517AG489518
length736725
length of high quality
(start - end)
497 (74 - 570)601 (70 - 670)
definitionCHROMAT_FILE: MSMg01no386_j08.b1 PHD_FILE: MSMg01no386_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:25 2005CHROMAT_FILE: MSMg01no386_j08.g1 PHD_FILE: MSMg01no386_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGA
ATTCTATGAAGTTTGCGAACATCAGATAGAAAAGTTGAGTTAGATTTTGA
TTTTTGCAAATTACTTAGAAATATGAAAATATCCACCAATTTTTCCTTTT
ACTGAACACACCCACACAATGGGGTGTCTATTCCAGGTCTTCAATACCGT
AGGAAGAGGTTGGTGGAGAACTCAGTGAATTCCCTTTTATCTCAGCTTGG
TAAACTGCCTATCAGGGAATACTAGCCCTCAGAGAGGAGGAAGTTAAGTT
TAGAAAATAAAGTAATTGTTCTATATCTCTAAACAATAATTTGGTAACTG
TGTTCAGAATGGTGAATTTTTATTTTTATCCCCAGGGAGTAGTTTTAGTC
ATGAAGAAACTAGAATCTGGACAAAACCACATACATTAATAAACTCAGGA
ATTCCGACACAATTGCAATGCAAAGTGTTAACTAACTTGAAGCCTGTGCT
ATATCATGGGGTAATAGCAGTGTACTTTTTCTGTGGCTAGAGATTATTTA
ACTAATAATTTGAGTTTTATTGTATTCACTGTAAGCGGCAGAGTGAAAAA
TTCCCAGGCAGAGAATTTGTGATTTGAAACATATATTAATTTATAAACAC
CTTATGAATACCCCACTTCTGCCTTTTGGAATGTAAACCGCCCAAATGAT
ACCCCTTCATGTATGCCGCTTGCCAATTTATTTAAA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATTCCAGGAATTCTTTGTTTAACTCTGTACTCCATTTTTT
TAAACAGGGTTATCTATTTCTCTGGTGCCTAACTTCTCGAATTCTTTGTA
TATATTGGATATTGGCTCTCTATCAGATGTAGGATTGGTAAAGATTTTTT
CCCAGTGTATTGGTTGTTTTTGTTTTTGTACTCACAGTGTCCTTTGCATT
TAGAGAAGCTTTGCAATTTTTTGAGGTCCAGCTTGTCAATTCTTGATTTT
ACAGCATAAGCTACTAGTGTTATGTTCTGTAAATATTCCCCTGTGCCCAT
GTGCTCGAGGCTCTTCCCACTTTCTTTTCTATTAGTTTCAGTGCATCTGG
TTTTATGTGGTTTTTTAGTCCTTGATTCATTTGGACTTGAGCTTTGTACA
AGGAGCTAAGAATGGGTCAATTTGCATTCTTCTACATAATGACCACCAGC
ACCATTTGTTGAAAATATTATCTGTTTTCAACTGGATGATTTTAGCACCT
TTGATCAAAGATCAAGTGACAAGAGGTATATGGGTTCATTTCTGGGTCTT
CAATTCTATTCCATTGATCTACCTGTCTGTCTCTGTACCAATACCATGCA
GTTTTTATCACTATGGTTCTGTCATACAGCTTGAGGTCAGGCATGTCGAC
TGACCCATAAGTTCTTTTGTTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_j08.b1 MSMg01no386_j08.b1 CHROMAT_FILE:
MSMg01no386_j08.b1 PHD_FILE: MSMg01no386_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:25 2005
         (497 letters)



>mm_chr1_12357394_12358290
          Length = 897

 Score =  903 bits (467), Expect = 0.0
 Identities = 488/495 (98%), Gaps = 2/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatagaaaagttgagttagattttgatttttgcaaattacttagaaatatgaaaatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agatagaaaagttgagttagattttgatttttgcaaattacttagaaatatgaaaatatc 635

                                                                       
Query: 61  caccaatttttccttttactgaacacacccacacaatggggtgtctattccaggtcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caccaatttttccttttactgaacacacccacacaatggggtgtctattccaggtcttca 575

                                                                       
Query: 121 ataccgtaggaagaggttggtggagaactcagtgaattcccttttatctcagcttggtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ataccgtaggaagaggttggtggagaactcagtgaattcccttttatctcagcttggtaa 515

                                                                       
Query: 181 actgcctatcagggaatactagccctcagagaggaggaagttaagtttagaaaataaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 actgcctatcagggaatactagccctcagagaggaggaagttaagtttagaaaataaagt 455

                                                                       
Query: 241 aattgttct-atatctctaaacaataatttggtaactgtgttcagaatggtgaattttta 299
           ||||||| | | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aattgtt-tgaaaccactaaacaataatttggtaactgtgttcagaatggtgaattttta 396

                                                                       
Query: 300 tttttatccccagggagtagttttagtcatgaagaaactagaatctggacaaaaccacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttttatccccagggagtagttttagtcatgaagaaactagaatctggacaaaaccacat 336

                                                                       
Query: 360 acattaataaactcaggaattccgacacaattgcaatgcaaagtgttaactaacttgaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acattaataaactcaggaattccgacacaattgcaatgcaaagtgttaactaacttgaag 276

                                                                       
Query: 420 cctgtgctatatcatggggtaatagcagtgtactttttctgtggctagagattatttaac 479
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 275 cctgtgctatatcatggggtaatagcagtgtactttttctgtggttagagaatatttaac 216

                          
Query: 480 taataatttgagttt 494
           |||||||||||||||
Sbjct: 215 taataatttgagttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)