BAC Information

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BAC

Clone NameMSMg01-386M08
Chromosome1 (Build37)
Map Location 85,101,743 - 85,101,984
singlet/doubletsinglet
Overlap geneA530032D15Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386M08.T7 (MSMg01no386_m08.b1)MSMg01-386M08.TJ (MSMg01no386_m08.g1)
ACCAG489661AG489662
length712729
length of high quality
(start - end)
242 (53 - 294)500 (69 - 568)
definitionCHROMAT_FILE: MSMg01no386_m08.b1 PHD_FILE: MSMg01no386_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:39 2005CHROMAT_FILE: MSMg01no386_m08.g1 PHD_FILE: MSMg01no386_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCACCAAATACGTGACCCGCCGCGGAATTCCACAGACATACCTAACAAAA
GCAAAGATTAATGCAGCCATCCCTACGCCTGTCAGATTGATAACCACAAC
AAAAATGTCTTCAAAGACAGAAACTGCAAACACTCAGAGACAGATACCAC
CACCTGCTTATATGAAAGGCACTGAGCCAGTTATTAACCACCCTATTTAT
TCCCAAAAGACACAGCATACTGCTGGTATCACTAGTGGACTTGACCAAAT
GTCACAGGATAAATGGTGCTTTCTTAGGACATCTGCAGGAGCAGATTCAG
TCCNGACTGTGTCCCTGTTGGGGGCATCACACACCTTCATCTCATCCTTT
CTATTTTTATTTTGAATTATGCATGTATGAGTCTGTCTCAGTGTGCTTCC
TGCACGCAAGTACAGTGTCGTGTCCATGGAAGGCAGAAAAGGCTGTCTGA
TCTGGAGTTGGCATGAGAGGCAGTTGGAAGCCCTAGGATAGGTGCTGGGG
ACTCAACCCATGCCCACTACTAGGGCAATACGAGTGCTTAAACCTGGGCC
ATCTCTCCTATCGTGTGAGCGTGTGTGTGCGTGCGTGTGTGTGTGTCAGT
GTGCTCGCTATACCTACTCTTTATACCCCTCTTTTTTTTCTTTTTTTTAT
CCCTTTCCTATTTATTTCTTTACTCCACTCCTCTCCCACTTTTTTTCCCC
CTCTTCATTCTT
ATGCAGTGGGAGGCCTGGNGGACGCCTGGATCGGCACCTGAGGTGAACTA
TAGAAGGTTACGAAAAATTCCTACCTTCTTGTGGCCATCTGAGGGACAGC
CATGAGACATGCTTGAGGACTGGGCTGGGTGAGTGAGTTGGAGAAGGGAA
GTAGCCAAGGTGACAAGGCCAACCGTTCTGTGCCCAGGGCCATTTCTGCC
TTCAGGAGAAGTCGGTCCTTCTGCATCAGTCTTGGAGGTTTGCTGTATCA
CCTGACTGCTGGACCACTTTCCTTCCCAGGTCCTTCTCCCCCTCCACATG
CAACCGATGGAATTCTTCTGTTTCCATCCTTAGCTACAGTCTGTCCAGAT
GATCATAGTCACTCTCCTGCTGCAGTTTCCACCTGTGTCCTTAGCTTCAT
GTGCCTCGCCTCTCCTTAGATCCTCGGGTTCTAATGCTCAGCCACATCTC
CTCTGCAACCCACCCTCCAATCGCACTCTGCTCCTTCTTTGGAACTTCCA
TTTTATATAACAGGCTCCATACGTCACAGACCTGGGTCTTCAGCCTGCCT
TTGTCTTATCTCTCACCTTCCAAATCCATCCCATCGTCAGTCCTATGGAT
ACTCACTTTAAGTTTATTCAAATTTTTCCTGCTCCAGTAAGGTCCATCTA
TTTATCTCTATATGGCGTTGGCAATTTTTTTAATGTTTATTATTCGACGA
ATTATTGAAGGCTTGCCACTCAGCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_m08.b1 MSMg01no386_m08.b1 CHROMAT_FILE:
MSMg01no386_m08.b1 PHD_FILE: MSMg01no386_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:39 2005
         (242 letters)



>mm_chr1_85101543_85102184
          Length = 642

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagattaatgcagccatccctacgcctgtcagattgataaccacaacaaaaatgtcttc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatcaatgcagccatccctacgcctgtcagattgataaccacaacaaaaatgtcttc 260

                                                                       
Query: 61  aaagacagaaactgcaaacactcagagacagataccaccacctgcttatatgaaaggcac 120
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aaagacagaaactgcaaatactcagagacagatacctccacctgcttatatgaaaggcac 320

                                                                       
Query: 121 tgagccagttattaaccaccctatttattcccaaaagacacagcatactgctggtatcac 180
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgagccagtgattaaccaccctatttattcccaaaagacacagcacactgctggtatcac 380

                                                                       
Query: 181 tagtggacttgaccaaatgtcacaggataaatggtgctttcttaggacatctgcaggagc 240
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tagtggacttgatcaaatgtcacaggagaaatggtgctttcttaggacatctgcaggagc 440

             
Query: 241 ag 242
           ||
Sbjct: 441 ag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)