BAC Information

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BAC

Clone NameMSMg01-386M17
Chromosome1 (Build37)
Map Location 171,842,096 - 171,982,339
singlet/doubletdoublet
Overlap gene1700084C01Rik, Hsd17b7, Ddr2
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960
Downstream geneLOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386M17.T7 (MSMg01no386_m17.b1)MSMg01-386M17.TJ (MSMg01no386_m17.g1)
ACCAG489679AG489680
length784757
length of high quality
(start - end)		274 (71 - 344)680 (67 - 746)
definitionCHROMAT_FILE: MSMg01no386_m17.b1 PHD_FILE: MSMg01no386_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:40 2005CHROMAT_FILE: MSMg01no386_m17.g1 PHD_FILE: MSMg01no386_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,842,096 - 171,842,369)(171,981,663 - 171,982,339)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGG
AATTCCCAGTGTTCCTCTAAATGTGTTGTTGACTGGAAGATATCTCTACC
TAAAGATGTCCGTGAACCATCAGCCATCCTAACCGGGTAGGGCAGATGAA
GAGCTTTCTAAGAAACCACATTCTTTCCCAAACACAGCAAGATTCAACTG
GACCATCTCATTCATTTTCTACCACTGTCTTCTGGAAGCCAAGTCTTATA
ATTAATTCTTCTTCTTTTTTATTTTTATTTTTTTCTGTACTAAAAGCTTA
AGAATCCTTTTTGTTGTTGGGTGGGTGGATTATAATTTGTTTGGNTTNGN
NTGNNTNNNTTNTTTTTATTNNNCCCTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNNNCCCCCCCCCTCCCCTTCTTTCTCCCTCTTTTCTTCC
TTTTTCTTCCCCCCCTCTCTTCTCTCTTTTTTCTTCCCCTTCCTCCTCTT
CCCTNCTCTTTTTTTTTCTTCCCCCTTCTTTCCCTTTCCTCTCTTTTTCT
TCTTCTTCTTCCTTTCTCCCCCCCCTTTTTTCTCTTCCTCTTCCTTCTCC
CCTCTCCTCCCTCTCTTTTCTCTTTTTTTCTCCCTCTTTCTCCTTTTCTT
TCTCTTCTCTCCTCCTCTCTCTCCTTTTTTTTTCTTCTTTTTCTCTTCTT
TTCCCTCTTCCTTTCTCTTTTCTTTTTTTTTTTCTCTTCTTCTCTCCCTC
TTTCCTNTCTCTTTCCTCTTTTCTTTTCTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGACTATTTGAAAGAGAGCCAAGACCTGCCCCC
AGCAGTTTAGAGAACAACCCAAATATTGGGTTTAACTGGTCTGCTAGAGA
AGTCATAAGATCCAGGTCCTAAGAACCCCTTGGCAGGCAAAAGTGAAACT
CTATAGAGTGTCCCAACAGCATCTGCTGACAGTGGAAGTATTCCACGTTT
CTAATGAGTGTAGGCTTAAACATACTTGGGAAAATAAGTCCCGGTAAGAG
ATTACTCTGACAGCTCTGCATGCTAACGTGGACTGCTTCTTATTAGAGCA
GAGGGGGATGGGCTTTCTGTTTGTTTTTGGTGTGTTTGTTTCTGCTGCCA
AGGTGTGTTGCAATGTCAAGGTTGTTTAATATGTATGAGCCTCCACCATG
TATGAGCGAGAATCAGAGTGCATTTGCTGTGAAATGAGATTGGTTCCAGT
CATTTAAACAGCTCCAGGTGTAATAAGAGTCGACAAGAATTGATGCCAAG
AACTGCTTTAAGGATTAACTCATTTAGTCCTGAGGCTGGTCCTTTCAGGC
AGGACTGCCATTGGCATTCCACTTTTAGATAATAAAACTTAGGTTTGCTT
ACAATAATACAGGCAGGCAAGGCTAGAGGTGACATTGAAGATGAGCTATC
ATGTTCTAAAGCCTGCATGTCAACTGCTAACTTAAAACCTGTGACGTGTT
GTTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_m17.b1 MSMg01no386_m17.b1 CHROMAT_FILE:
MSMg01no386_m17.b1 PHD_FILE: MSMg01no386_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:40 2005
         (274 letters)



>mm_chr1_171841896_171842569
          Length = 674

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgttgttgactggaagatatctctacctaaagatgtccgtgaaccatcagccatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgttgttgactggaagatatctctacctaaagatgtccgtgaaccatcagccatcct 260

                                                                       
Query: 61  aaccgggtagggcagatgaagagctttctaagaaaccacattctttcccaaacacagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccgggtagggcagatgaagagctttctaagaaaccacattctttcccaaacacagcaa 320

                                                                       
Query: 121 gattcaactggaccatctcattcattttctaccactgtcttctggaagccaagtcttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattcaactggaccatctcattcattttctaccactgtcttctggaagccaagtcttata 380

                                                                       
Query: 181 attaattcttcttcttttttatttttatttttttctgtactaaaagcttaagaatccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaattcttcttcttttttatttttatttttttctgtactaaaagcttaagaatccttt 440

                                             
Query: 241 ttgttgttgggtgggtggattataatttgtttgg 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttgttgggtgggtggattataatttgtttgg 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no386_m17.g1 MSMg01no386_m17.g1 CHROMAT_FILE:
MSMg01no386_m17.g1 PHD_FILE: MSMg01no386_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:41 2005
         (680 letters)



>mm_chr1_171981663_171982742
          Length = 1080

 Score = 1294 bits (669), Expect = 0.0
 Identities = 675/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagactatttgaaagagagccaagacctgcccccagcagtttagagaacaacccaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagactatttgaaagagagccaagacctgcccccagcagtttagagaacaacccaaatat 618

                                                                       
Query: 61  tgggtttaactggtctgctagagaagtcataagatccaggtcctaagaaccccttggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgggtttaactggtctgctagagaagtcataagatccaggtcctaagaaccccttggcag 558

                                                                       
Query: 121 gcaaaagtgaaactctatagagtgtcccaacagcatctgctgacagtggaagtattccac 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcaaaagtgaaactctatagagtctcccaacagcatctgctgacagtggaagtattccac 498

                                                                       
Query: 181 gtttctaatgagtgtaggcttaaacatacttgggaaaataagtcccggtaagagattact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtttctaatgagtgtaggcttaaacatacttgggaaaataagtcccggtaagagattact 438

                                                                       
Query: 241 ctgacagctctgcatgctaacgtggactgcttcttattagagcagagggggatgggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgacagctctgcatgctaacgtggactgcttcttattagagcagagggggatgggcttt 378

                                                                       
Query: 301 ctgtttgtttttggtgtgtttgtttctgctgccaaggtgtgttgcaatgtcaaggttgtt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 ctgtttgtttttggtgtgtttgtttctgctgccaaggtgtgttgtaatgtcaaggttgtt 318

                                                                       
Query: 361 taatatgtatgagcctccaccatgtatgagcgagaatcagagtgcatttgctgtgaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taatatgtatgagcctccaccatgtatgagcgagaatcagagtgcatttgctgtgaaatg 258

                                                                       
Query: 421 agattggttccagtcatttaaacagctccaggtgtaataagagtcgacaagaattgatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agattggttccagtcatttaaacagctccaggtgtaataagagtcgacaagaattgatgc 198

                                                                       
Query: 481 caagaactgctttaaggattaactcatttagtcctgaggctggtcctttcaggcaggact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caagaactgctttaaggattaactcatttagtcctgaggctggtcctttcaggcaggact 138

                                                                       
Query: 541 gccattggcattccacttttagataataaaacttaggtttgcttacaataatacaggcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gccattggcattccacttttagataataaaacttaggtttgcttacaataatacaggcag 78

                                                                       
Query: 601 gcaaggctagaggtgacattgaagatgagctatcatgttctaaagcctgcatgtcaactg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gcaaggctagaggtgacattgaagatgagctatcatgttctaaagcctgcatgtcaactg 18

                            
Query: 661 ctaacttaaaacctgtg 677
           |||||||||||||||||
Sbjct: 17  ctaacttaaaacctgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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