BAC Information

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BAC

Clone NameMSMg01-387F02
Chromosome1 (Build37)
Map Location 156,121,335 - 156,121,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387F02.T7 (MSMg01no387_f02.b1)MSMg01-387F02.TJ (MSMg01no387_f02.g1)
ACCAG490079AG490080
length773751
length of high quality
(start - end)
375 (44 - 418)411 (86 - 496)
definitionCHROMAT_FILE: MSMg01no387_f02.b1 PHD_FILE: MSMg01no387_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:20 2005CHROMAT_FILE: MSMg01no387_f02.g1 PHD_FILE: MSMg01no387_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCATGGGTTTCTTCCTGTCTGCTTTTATTTTCTCTTGTTTTAGGTGCG
TCCAGTTAGAGTTGGCTAAGTGCTGAACATTGAGAGTTGAGGCCCGGTAT
GATGTTATCTTCCTTCAGAAGCAGTTAGCTTACTTCTCGTGAGCTGCTAG
GTTAGGAACACTGGCATCCCCAGATCTCTTGCTGCCATCAGATTCTCAAA
GAGATCGAAGCTTGCATTGCATCTCTATGAGAGTCAGTGCCAACTGACTG
CTTACACACAAAGTCCAACCCTCCAAAACTCCACCTACAACAGATTCCCT
TCCGTGTGCTTAAGCTCGAATGTTTGAGTCCCTACCCAAAACTCAAAGGT
CTGAAGTAGTTTTTCCTCTCTCACACAAAGTATATGGAATTCTTCTCTGG
CTTTTAATTAATTTATTAATTTATTCACTTTACATTTCCCCTCTCCTTGA
AGTCCCACCTTTGAACCCCCTCCCCTTCCTTCTCCCCTTCCTCTTCTAGA
ACGGATAACACCCCCACTTTCCTGACACCCGCTCTACCCCGTGCCCTCCC
CCCTTCCCACCCCCCTTATATACTTCCCCCTTTCTTGCTCTCTTCTCTCT
CCTCTTCGCCTTCCCCCCCTTCCCTCTTCTCCCCCCCCTTTCCCCTCTGT
GTCCCTTCCCCCCGCCCCCCCCCCCTTTCCTTTTTCTTTTCTTTTGCCCG
CCCTCCTCCACCTCGTTTCTCTT
CCAACCCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAGGTTTTAGA
TGTTAGTTCTTTGTCTGATGTAGGATTGGTGAGGATACTCTCTGGCTCTG
TAGGCTGACATTTTGTCCTTGACAGTGGCTTTCACCTTCTAGAAGCTTTC
CTGTTTCACAAGGGCCCATTTATTAATTGTGGATCTTAGAGCCTGAGCCA
CCGATGTTCTGTTCAAGAACTTGTCTCCAGTGTCAATGCATTCAAGGGCA
CGTCCCACTTTCTCTTCTATCAGAGTTAGTGTATGCAGTTTTATGTTGAG
GTCTTTCATCCACTTGACTTGAATTTTGTGTAGGGTGGTTAAATACAAAC
CTATTTGCATTCTTCGACATTCAGACATTCAGTTAGACCCGTACCATTTG
TTGAAGATGCCTTTCCCCCCCGTTGGTTAGTTTTGATTCCTTTGTCAAAA
ATCAAGTGTCTGTACGTGTGTGCGCTTATTTCTGGTTCTTTGTACCGCAT
CCCTTGACCATTTCGTCTCCACCCTTTCGCTTTCCCATCCTCCTTCTCTT
TTACTTTCCCGCCCTCCAATTCTTCTTCATACAATCGACGCCTCACCCCT
TACCTTCACCTTCGCATGTCGTTATCTTCTTTCTATTTCCACCCTTACCT
CCTCTTCTCTCTACATATATTCCTTCTTCCTTTTTTCTCTCCAAACTCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_f02.b1 MSMg01no387_f02.b1 CHROMAT_FILE:
MSMg01no387_f02.b1 PHD_FILE: MSMg01no387_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:20 2005
         (375 letters)



>mm_chr1_156121133_156121907
          Length = 775

 Score =  702 bits (363), Expect = 0.0
 Identities = 371/375 (98%), Gaps = 4/375 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcatcatggg--tttcttcctgtctgcttttattttctcttgttttaggtgcgtcc 60
           ||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattcatcatgggcctt--ttcctgtctgcttttattttctcttgttttaggtgcgtcc 518

                                                                       
Query: 61  agttagagttggctaagtgctgaacattgagagttgaggcccggtatgatgttatcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agttagagttggctaagtgctgaacattgagagttgaggcccggtatgatgttatcttcc 458

                                                                       
Query: 121 ttcagaagcagttagcttacttctcgtgagctgctaggttaggaacactggcatccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttcagaagcagttagcttacttctcgtgagctgctaggttaggaacactggcatccccag 398

                                                                       
Query: 181 atctcttgctgccatcagattctcaaagagatcgaagcttgcattgcatctctatgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atctcttgctgccatcagattctcaaagagatcgaagcttgcattgcatctctatgagag 338

                                                                       
Query: 241 tcagtgccaactgactgcttacacacaaagtccaaccctccaaaactccacctacaacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcagtgccaactgactgcttacacacaaagtccaaccctccaaaactccacctacaacag 278

                                                                       
Query: 301 attcccttccgtgtgcttaagctcgaatgtttgagtccctacccaaaactcaaaggtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 attcccttccgtgtgcttaagctcgaatgtttgagtccctacccaaaactcaaaggtctg 218

                          
Query: 361 aagtagtttttcctc 375
           |||||||||||||||
Sbjct: 217 aagtagtttttcctc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)