BAC Information

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BAC

Clone NameMSMg01-387O16
Chromosome1 (Build37)
Map Location 88,498,699 - 88,646,260
singlet/doubletdoublet
Overlap geneCops7b, Nppc, 4930429A22Rik
Upstream geneSp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
Downstream geneEG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387O16.T7 (MSMg01no387_o16.b1)MSMg01-387O16.TJ (MSMg01no387_o16.g1)
ACCAG490537AG490538
length805781
length of high quality
(start - end)		236 (70 - 305)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no387_o16.b1 PHD_FILE: MSMg01no387_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:07 2005CHROMAT_FILE: MSMg01no387_o16.g1 PHD_FILE: MSMg01no387_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,498,699 - 88,498,934)(88,645,831 - 88,646,260)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGCATCCGCGG
AATTCTCTTGTATTACCCTTTTATCGAAAACCATTATTAAGTATATTCAG
TGTACCTGGGGAGACATAATGCAACAGTAGCATTCCCGGGCTTTGCAGTG
TCTCCGAGCAGCTACTCTGGAGGGAAAGGAACGATGGCTTGCAGCACCAC
AAAGCCCCTTTCATTGCATTTGCTTTTGGAATCTATTTTTCTTTATATTT
GAATGTGCCTATGTCTGGTGTTTTGTGGGATATTAATATCTAGCTGTTGT
TACATGTTCACAAAATAGGCTGTGTTCCACCCAACTTAGGTAATAGAACA
AGAGTAAGTGGTTTGGTTCCGTGTGCCTGCGCGCGCGCGCGTCCCCCCCC
CTCTTTCCCTCCCCCCCCCCCCCTTCTCTTCCCTTCCTCTATCTCTCCCT
CCCCCTTCGCCCCTTCTCCCTCTCCCCTCCCCCTCCCCCCACTCACCCTC
TTCACCTCTACCCGTCTACCACCCCCCTCCCCCCTCCCTCCCTCTTCCCC
CCCCCCCTTCCCCCATCCCTCCCTTCTCCCACTCCTCCCCTCCCCCCCCA
AACCCACCCTCCCCTTCCCCCTCCCCCCCCACCCCCCCCCATCCCCCTTT
CTCCCCCTTTCCCCTTCCTCCCATCCCTCCCCCCCCCCCCCGCCTTCCCC
CCCTTCCCACTTGTCACAGCCCCTCCTCCTCCCCTCCTCTCCTATTTTCC
CCTCCTTCCCGCCCCTCCCCTCTCCCCTTCCCCTCTTCTCCCCCCCCTCT
CTCCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGCAATGTTAAAAAAAAAAAA
AGGTGACTTGCTGTCTTCTAAGAATCAAGGGAGAAAGTGGTCATGGGATG
CTGTTTCTTGGGATAATCCAAAGGGAACCTGGAGTAAATGACTGAATTGA
TTTGTAAATAACACAGGCTGCCAGCTTGTACCCCAAGATTGACTTCGAGT
CGTTTTTTTCCATTTCAAACACCCCTTCTCTCAGGAACCCCTTTCTAAGC
AAAAGCTGGTCCCTGGCAAAATCCAAGTTTCTAATATAGTCTAAGTCCCT
AAAGGACTTGGCTACTGCCTAACTCCACCTTTGCTCCATTAAGTCTCCAA
AGGCTGCTTCCTTTTCATCCTCTAAAACATCAAGTCTTCTCCGTGCTGTT
CTTCTGCTTGCTGATCTCTTTACCTATATTCTTTTCCAAAGCTGAAATTA
GCTGCTCACTTTTGTTCTTTAGCTCTCACCTACAGGATGATCTCACAGAG
ACTTCCCTAACCAATATGTGCAGTGGTTCCTTCTATCTATTCTCTCTCCT
CTTTCTCTTGGAACATTTATGGACTACAATTTCCTTCCCTTTTAAAGTTA
TTTTTTGCCACCCCAGGGACCTTTCTAAGGCTTCTTCCCAACAGTTTGAA
ATTCCCTAAGTTGTTCCAAAGGTTTTTTCACCTTCTTTACTCCCTATTAT
TTTGAAGGTTAATCCCCCCCCCCTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_o16.b1 MSMg01no387_o16.b1 CHROMAT_FILE:
MSMg01no387_o16.b1 PHD_FILE: MSMg01no387_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:07 2005
         (236 letters)



>mm_chr1_88498499_88499134
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatcgaaaaccattattaagtatattcagtgtacctggggagacataatgcaacagta 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcaaaaaccattattaagtatattcagtgtacctggggagacataatgcaacagta 260

                                                                       
Query: 61  gcattcccgggctttgcagtgtctccgagcagctactctggagggaaaggaacgatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcattcccgggctttgcagtgtctccgagcagctactctggagggaaaggaacgatggct 320

                                                                       
Query: 121 tgcagcaccacaaagcccctttcattgcatttgcttttggaatctatttttctttatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagcaccacaaagcccctttcattgcatttgcttttggaatctatttttctttatatt 380

                                                                   
Query: 181 tgaatgtgcctatgtctggtgttttgtgggatattaatatctagctgttgttacat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaatgtgcctatgtctggtgttttgtgggatattaatatctagctgttgttacat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no387_o16.g1 MSMg01no387_o16.g1 CHROMAT_FILE:
MSMg01no387_o16.g1 PHD_FILE: MSMg01no387_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:07 2005
         (472 letters)



>mm_chr1_88645389_88646260
          Length = 872

 Score =  808 bits (418), Expect = 0.0
 Identities = 427/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 43  taagaatcaagggagaaagtggtcatgggatgctgtttcttgggataatccaaagggaac 102
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 872 taagaatcaagggagaaagtggtcatgggatgctgattcctgggataatccaaagggaac 813

                                                                       
Query: 103 ctggagtaaatgactgaattgatttgtaaataacacaggctgccagcttgtaccccaaga 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctggagtaaatgactgaattgatttgtaaataacacaggctgccagcttgtaccccaaga 753

                                                                       
Query: 163 ttgacttcgagtcgtttttttccatttcaaacaccccttctctcaggaacccctttctaa 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttgacttcgagtcgtttttttccatttcaaacaccccttctctcaggaacccctttctaa 693

                                                                       
Query: 223 gcaaaagctggtccctggcaaaatccaagtttctaatatagtctaagtccctaaaggact 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gcaaaagctggtccctggcaaaatccaagtttctaatatagtctaagtccctaaaggact 633

                                                                       
Query: 283 tggctactgcctaactccacctttgctccattaagtctccaaaggctgcttccttttcat 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tggctactgcctaactccacctttgctccattaagtctccaaaggctgcttccttttcat 573

                                                                       
Query: 343 cctctaaaacatcaagtcttctccgtgctgttcttctgcttgctgatctctttacctata 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cctctaaaacatcaagtcttctccgtgctgttcttctgcttgctgatctctttacctata 513

                                                                       
Query: 403 ttcttttccaaagctgaaattagctgctcacttttgttctttagctctcacctacaggat 462
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 512 ttcttttccaaagctgaaattagctgctcacttttgttctttagatctcacctacaggat 453

                     
Query: 463 gatctcacag 472
           ||||||||||
Sbjct: 452 gatctcacag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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