BAC Information

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BAC

Clone NameMSMg01-388B04
Chromosome1 (Build37)
Map Location 108,419,981 - 108,584,304
singlet/doubletdoublet
Overlap geneBcl2
Upstream genePign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneLOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388B04.T7 (MSMg01no388_b04.b1)MSMg01-388B04.TJ (MSMg01no388_b04.g1)
ACCAG490655AG490656
length720751
length of high quality
(start - end)
505 (151 - 655)537 (66 - 602)
definitionCHROMAT_FILE: MSMg01no388_b04.b1 PHD_FILE: MSMg01no388_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:19 2005CHROMAT_FILE: MSMg01no388_b04.g1 PHD_FILE: MSMg01no388_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,583,800 - 108,584,304)(108,419,981 - 108,420,517)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAGGATCCGCGGAA
TTCCTTTTTCGCTACGAAAATATGGGACGCTTATCTTTCTAGTTTTAAAC
TATTCATCATCAACATCATCATTTGTTATGAGGATGAGTGGGAACACACA
TGGTGCAGGGGAGGGCCTGTACCGTGTTGTGCAGGAGGAGGTCAGACAAG
CATTTTGTAGAGTCCATTTTGTCCTCCTCTCTTTACATGGTTGTGGGAGT
GAAATCAGGCCACCAAGCTTACTCAGCATCAACCTTTTATCTACCCAGCC
ATCTGGCTGTCCCCACCGTTTCCACTTTCATATGCTGGATAACTGACTTG
GAAGTTTCCTGAACAGTACTTACTTGGGCTCATTTCCCCGACTTCCCATA
TTCTTCCTCTGACTCTCTTGTGAATGGTTTCCTCCACTCCCATAGCTTCA
TTCATTATCTCTATTTGCAGCTGATTCTGCACATTCTTGTTCATGCTCTT
TTCTGATGACCCTTTCTATCTGGCGTCCTCGTTGGCAACTGGAATTAAAC
ATGCTGTCAACTCTTCAGCTCAGCACTAAACCCATCATTGTCCCCCCAAA
ACCTTTCTCAGACTCAGCACCGTCTCTTCATGTTACTGCCATATTCCTGA
TGTCCCCGGCTCAGCACTGGCCTGTATGTTGCTCTAGCTGCCCATGCAGG
GAGCCCGGAGGCCCCGGGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATGTCTCCGTATTCTTTGTTGGCCTGCATGAAAC
TAAAACCTAGAAGGTTACATTAAGCATGATCACCCTGCTCCTTGGGACTC
AGAAAAGGCCTTGAATGTGGCAGTTTGCAGGCATGTGATTGCACATAACA
CAATGGCACAAATGAGTGTTTTTCTTTCTTCTTACAGAAAGGAAATTCGC
TCACGGAGAGTCTGTGAGTAACTAAATTCCAACCTTTGCCATTTCTCCAC
CACGAAAGGTTGCTCACCCAAAGAGCCTTGGAGTCAGATGTGTGTCAGTC
CACCTGGGTGAGTTTTAAAGCAGTGTCTAGGTGAAAGGCTGGACCTCCCT
CTCTGGAGTATTTGCAAGTTGAAACTTCAATGCATTCAATTCTTCTTTTT
CTTTCCTTTTTTGNATTTAATACATATTTTATATACTTCCATCTTAAAAG
CTTTCTGATTGATTGGCGGCCGGCGGCCAGCACTCTTATCTAACTGGACT
AAGTTCCCGCTCTCTCCACAGCTGCTGAGTCGTTGGNGTCTGCAGCTGTC
TGGAGTGAGACCAAGAACATCCAGGAAAGCCCAGGCTGTGTGGAAGGGGC
CTTTCTGTTCTCTCTTCAGCTGAACTCTGGCTGTTGTTCAATGCACCTGA
ATGCATTCCACTCCCTTCGGCTTTTGAATCAAAAAAGTCCCGCCGCGAAC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_b04.b1 MSMg01no388_b04.b1 CHROMAT_FILE:
MSMg01no388_b04.b1 PHD_FILE: MSMg01no388_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:19 2005
         (505 letters)



>mm_chr1_108583436_108584340
          Length = 905

 Score =  907 bits (469), Expect = 0.0
 Identities = 496/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgcaggggagggcctgtaccgtgttgtgcaggaggaggtcagacaagcattttgtag 60
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 869 tggtgcaggggagggcttgtaccgtggtgtgcaggaggaggtcagacaagcattttgtag 810

                                                                       
Query: 61  agtccattttgtcctcctctctttacatggttgtgggagtgaaatcaggccaccaagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agtccattttgtcctcctctctttacatggttgtgggagtgaaatcaggccaccaagctt 750

                                                                       
Query: 121 actcagcatcaaccttttatctacccagccatctggctgtccccaccgtttccactttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 actcagcatcaaccttttatctacccagccatctggctgtccccaccgtttccactttca 690

                                                                       
Query: 181 tatgctggataactgacttggaagtttcctgaacagtacttacttgggctcatttccccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 689 tatgctggataactgacttggaagtttcctgaacagtacttacttggactcattcccccg 630

                                                                       
Query: 241 acttcccatattcttcctctgactctcttgtgaatggtttcctccactcccatagcttca 300
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 629 acttcccatattctccctctgactctcttgtgaatggtctcctccactcccatagcttca 570

                                                                       
Query: 301 ttcattatctctatttgcagctgattctgcacattcttgttcatgctcttttctgatgac 360
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 569 ttcattatctctatttgcagctgattctgcacgttcttgttcatgctattttctgatgac 510

                                                                       
Query: 361 cctttctatctggcgtcctcgttggcaactggaattaaacatgctgtcaactcttcagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctttctatctggcgtcctcgttggcaactggaattaaacatgctgtcaactcttcagct 450

                                                                       
Query: 421 cagcactaaacccatcattgtccccccaaaacctttctcagactcagcaccgtctcttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 cagcactaaacccatcattgtccccccaaaacctttctcagactcagcaccttctcttca 390

                                    
Query: 481 tgttactgccatattcctgatgtcc 505
           |||||||||||||||||||||||||
Sbjct: 389 tgttactgccatattcctgatgtcc 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no388_b04.g1 MSMg01no388_b04.g1 CHROMAT_FILE:
MSMg01no388_b04.g1 PHD_FILE: MSMg01no388_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:19 2005
         (537 letters)



>mm_chr1_108419781_108420717
          Length = 937

 Score =  988 bits (511), Expect = 0.0
 Identities = 530/537 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtctccgtattctttgttggcctgcatgaaactaaaacctagaaggttacattaagc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 catgtctccgtattctttgttggcctgaatgaaactaaaacctagaaggttacattaagc 260

                                                                       
Query: 61  atgatcaccctgctccttgggactcagaaaaggccttgaatgtggcagtttgcaggcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgatcaccctgctccttgggactcagaaaaggccttgaatgtggcagtttgcaggcatg 320

                                                                       
Query: 121 tgattgcacataacacaatggcacaaatgagtgtttttctttcttcttacagaaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattgcacataacacaatggcacaaatgagtgtttttctttcttcttacagaaaggaaa 380

                                                                       
Query: 181 ttcgctcacggagagtctgtgagtaactaaattccaacctttgccatttctccaccacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttcgctcacggagagtctgtgagtaactaaattccaacctttgccatttctccaccatga 440

                                                                       
Query: 241 aaggttgctcacccaaagagccttggagtcagatgtgtgtcagtccacctgggtgagttt 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggggctcacccaaagagccttggagtcagatgtgtgtcagtccacctgggtgagttt 500

                                                                       
Query: 301 taaagcagtgtctaggtgaaaggctggacctccctctctggagtatttgcaagttgaaac 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagcagtgtctaggtgaaaggctggacctccctctctggagtatttgcaagttgaaac 560

                                                                       
Query: 361 ttcaatgcattcaattcttctttttctttccttttttgnatttaatacatattttatata 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 ttcaatgcattcaattcttctttttctttccttttttgtatttaatacatattttatata 620

                                                                       
Query: 421 cttccatcttaaaagctttctgattgattggcggccggcggccagcactcttatctaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttccatcttaaaagctttctgattgattggcggccggcggccagcactcttatctaact 680

                                                                    
Query: 481 ggactaagttcccgctctctccacagctgctgagtcgttggngtctgcagctgtctg 537
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ggactaagttcccgctctctccacagctgctgagtcgttggtgtctgcagctgtctg 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)