BAC Information

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BAC

Clone NameMSMg01-388H17
Chromosome1 (Build37)
Map Location 15,018,797 - 15,019,133
singlet/doubletsinglet
Overlap genenone
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388H17.T7 (MSMg01no388_h17.b1)MSMg01-388H17.TJ (MSMg01no388_h17.g1)
ACCAG490967AG490968
length768774
length of high quality
(start - end)
472 (37 - 508)533 (78 - 610)
definitionCHROMAT_FILE: MSMg01no388_h17.b1 PHD_FILE: MSMg01no388_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:50 2005CHROMAT_FILE: MSMg01no388_h17.g1 PHD_FILE: MSMg01no388_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTA
GATCTAATTGGTGTGTGTAGGACTAATATCTGTGGGGAACTTTCTTGACT
GATGATAAGTATGGAAAGGTACCCACTGTGGCTACCACCATCCTTGGCAA
ATGGACCTGGACTATATAAAAAGTCAGGCTAAGAATGAAGCAGGGAGCAA
GCCAGCAGGCAGTGTATCTCTGTTGGTTCCTGTTACAAACTCCTGCCTTG
AGTTCCTGTCATGGCTTTCCTTGATGACCCACTGTGATGTATAACTAGAA
ATACATTGCATTTCACCAAAATTGCTTTTGGTCATGGTGTTTGTTTACCA
CAGCAACAGAAAAGCTAGAACTTGAAAGGGAGGGAGGTGGGAGAATTCGT
ATATATTTCTTTTCTAAAATTTAGCATTAAATGATACCTGGAAGAGTAAG
CAGTATGTGGACTTGTTACAAAATATTATCTTAAAGGACCATTATCTCTT
ATTTTCAGGTATGCTCTTGATTTGAATGTGTATTTTATTGTAAAAGCTGG
GCATGTACAAGGTGGAATTTCAAGAATCATGGAAGGATGCTTAGAGCTTG
CCCACAGTTGAAAAGTGAAGACCATGCCCGGCTACCTCCCAGATGATACC
GCCGACCGGCCCTGCCTGGCAGTAATGCCCGCGCATGATTCCCTCCCGGC
TGGAGGAAACCCACCTCTCTTACCCCCCTCACGCACACCTCACCATAACC
CCCGTCCCCCAAACGGTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGATTACTGAAGGGC
TGAGAAGGACCTGAAAAAAATGTTCAACATGCTTAATCATCAGGGAAATG
CAAATCAAAACAACACTGACATTCCACCTTACACCAATCAGAATGGCTAA
GATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCTATAAAATTGGACATAGTACTACCGGAAG
ATCCAGAAATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACCGAT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAACCTGGAAAGAACACAGATGCCCCTCAACAGAGGAATGGATACAAA
AAATGTGGTACTTTTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACCCAATCACAAAGGAACTCTCACAATATGTACTCACTGA
TAAGTGGATATTAACCAAGAAACTTAGGATACTCAAGATATAAGATATAA
TTTGCTAAAAACCATTAAACCCAGCAAACGAAGACCCAAGTGGGATCCCT
TTGCCCCCTCCTTAAAAAAGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_h17.b1 MSMg01no388_h17.b1 CHROMAT_FILE:
MSMg01no388_h17.b1 PHD_FILE: MSMg01no388_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:50 2005
         (472 letters)



>mm_chr1_15018262_15019133
          Length = 872

 Score =  613 bits (317), Expect = e-180
 Identities = 332/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 136 agtcaggctaagaatgaagcagggagcaagccagcaggcagtgtatctctgttggttcct 195
           ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 872 agtcaggctaagaatgaagcagggaacaagtcagcaggcagtgtgtctctgttggttcct 813

                                                                       
Query: 196 gttacaaactcctgccttgagttcctgtcatggctttccttgatgacccactgtgatgta 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gttacaaactcctgccttgagttcctgtcatggctttccttgatgacccactgtgatgta 753

                                                                       
Query: 256 taactagaaatacattgcatttcaccaaaattgcttttggtcatggtgtttgtttaccac 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 taactagaaatacattgcatttcaccaaaattgcttttggtcatggtgtttgtttaccac 693

                                                                       
Query: 316 agcaacagaaaagctagaacttgaaagggagggaggtgggagaattcgtatatatttctt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agcaacagaaaagctagaacttgaaagggagggaggtgggagaattcgtatatatttctt 633

                                                                       
Query: 376 ttctaaaatttagcattaaatgatacctggaagagtaagcagtatgtggacttgttacaa 435
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 632 ttctaaaatttagcattaagtgatacctggaagagtaagcagtatgcggacttgttacaa 573

                                                
Query: 436 aatattatcttaaaggaccattatctcttattttcag 472
           |||||||||||||||||||||||||||||||||||||
Sbjct: 572 aatattatcttaaaggaccattatctcttattttcag 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)