Query= MSMg01no388_i19.b1 MSMg01no388_i19.b1 CHROMAT_FILE:
MSMg01no388_i19.b1 PHD_FILE: MSMg01no388_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:54 2005
(452 letters)
>mm_chr1_77448286_77449137
Length = 852
Score = 534 bits (276), Expect = e-156
Identities = 285/288 (98%)
Strand = Plus / Plus
Query: 5 gaattcaagtcccatcacccaagttggggagctcactcctgtaggtaactctatctccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtcccatcacccaagttggggagctcactcctgtaggtaactctatctccag 264
Query: 65 gggactgagatctctggctcaggtaggcaccagactggaaggtcacacagaaacacacac 124
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggactgagatctctggctcgggaaggcaccagactggaaggtcacacagaaacacacac 324
Query: 125 ataattaaaatcaaactcaatctttaaagcaataatggtgggagtggagaggacctggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataattaaaatcaaactcaatctttaaagcaataatggtgggagtggagaggacctggtt 384
Query: 185 gattccctgtacctacaattagtgacttccagggacaaatgttttctctgccttgtgtct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattccctgtacctacaattagtgacttccagggacaaatgttttctctgccttgtgtct 444
Query: 245 atggagacaggctcattccaaccccaaatcaggcaggcagagaaggac 292
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 atggagacaggctcattccaaccccaaatcagacaggcagagaaggac 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_i19.g1 MSMg01no388_i19.g1 CHROMAT_FILE:
MSMg01no388_i19.g1 PHD_FILE: MSMg01no388_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:55 2005
(536 letters)
>mm_chr1_77630948_77631884
Length = 937
Score = 973 bits (503), Expect = 0.0
Identities = 529/540 (97%), Gaps = 7/540 (1%)
Strand = Plus / Minus
Query: 1 tccttcc-atactgttttcacatcattggttaattgtctctgtctttagtagtgcttcct 59
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 705 tccttccaatactgttttcacatcattggttgattgtctctgtctttagtagtgcttcct 646
Query: 60 aaaacattgatgccttttgaaggtgtttgttgtctagctgtagacacctgaagaaagcag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaaacattgatgccttttgaaggtgtttgttgtctagctgtagacacctgaagaaagcag 586
Query: 120 ctttctggtctattgcttcgcgaaggatgcagttactatgagagcttagctttatgtaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ctttctggtctattgcttcgcgaaggatgcagttactatgagagcttagctttatgtaaa 526
Query: 180 tgctcaagtttcaaactgctgcctcaacttttgtttttgcaaataattaaaagcgaaacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgctcaagtttcaaactgctgcctcaacttttgtttttgcaaataattaaaagcgaaacc 466
Query: 240 ---ttattaacatctacatcccccgagcccagatcctgtggcttctgccaggactcacat 296
| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 465 aag--agcaacatctacatccccc-agcccagatcctgtggcttctgccaggactcacat 409
Query: 297 tccagaggcagctgcagtggatttgcacttgctaatagttctagaacttaattttctctt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tccagaggcagctgcagtggatttgcacttgctaatagttctagaacttaattttctctt 349
Query: 357 ctatttgagcacttaacattactctttcctcattgtaaactcatctatatagataaacat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctatttgagcacttaacattactctttcctcattgtaaactcatctatatagataaacat 289
Query: 417 atgctcatattctatgctttcatatggtacttggacttttaaaaagaaaaggaggaaaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgctcatattctatgctttcatatggtacttggacttttaaaaagaaaaggaggaaaat 229
Query: 477 cactatgaactaatataaaagaactttctaaaatatattanataatataataaaggacaa 536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 228 cactatgaactaatataaaagaactttctaaaatatattaaataatataataaaggacaa 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
