XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATGCGCGGAATTCAAAC
CTTCTGGCAGCTTGAACGCTAGTATCTTTCTTTACTTTAAAACCAATTTT
ATCTGCTTCTATAAAGCTGTGGTCCTATTTTACTTCACAAAAATGATAAG
AGTCGATGGTGGTGATGGTGAAGCTACTAATGTTTCTATGTTGAGAATAT
ACATAAGTTCACAAAGAGCACTATAGCTGCGTTCAGCGGGAGCCTTAAAA
CCACTCAGTGGAGAAAGAATAAGCATAGGAAAAAAAATCCATGTGGAGTC
TGCAGATGAACATGACAATGATTTTTTAAAAAATTGGTCTAACAAGTAGT
AAAAATGAAATGCAGTGCTCTGTCCTCAGCACTACCTAAACCTACAGNGT
GCCCGCCTCCCTTCTGAGAAGCAATTGAAGTAGCTAAGCAACACTGGTCT
CAGAATCTGCAGCATCGGACTCTTTAGTCACTTTGTTTAGCCACTTGCTG
TGTATGTATGCCACTTGGTCATTGTGCTGGGAAGGACTCTGTCTAGGAAG
CTGGGCTTCAGTAAGCATGGCCAAACTGGGAATGTACCCGTGCAAGTAGC
ATGTGCGAAGGAGGTCGGAAACGAATGTCCACCGCAGTGGGATAGGACAG
AAATGAACCCGATTGGCACCTGTCAAAATGTCGGGCCTTTGCACGGATCA
CCCTGTGTTAGCACCCTCAACCTATAATATGGTTGCTCGATATATCATGT
N

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATTCCTTCCTCCCTATC
TTCCTTCCTTCCTCCCTATCTTCCTTCTTTCCTTCCTTCTTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGCCTGCCTGCC
TGCCTGCCTGCCTGCTTTCCTTCTTTTCTTCCCTCCATTTCTCCTTTCTT
CTTTTCCTCCTTTCCCCCTTCCTTCTTCCTTCCTTCCTTATTCTTCCTTC
CTTCCTTTTTTCCTCCCTTTTTTTTCTCCTTGTTCAAAGGGTAAGAGAGA
CTTCTGTATTTAATGTGGGGAATACAGGAGTCACTTAAGTACTGTAGTCA
GATTGATTTTTGTCCACCCCCGTGGATCTTCCACTGCAAAGTGGGTTGTT
GCAAGTTACTTGCTGTGATTAGATTCTCTACCAAATGCAAAACCAAAGCC
TCCTCTATTATCAAGAAGTCGCTTCTCTCAATGGTATTTCTCTAATGATC
ACATATTGTTTCCCAGGAAGTGCTCCTCAATTATTTAGGAGGAACAGCCT
GTCACCCCGCGCACTAAGACGTGACTATGCACATCCAATCCCTAAGACGC
ACTTGATCTCATTCTTTCAGCATTGGCAAGGAAATCAATGGCAAACGCTT
TCTTTATGTTTTTATGTTAATTTGGAAAGTTGCTTGCTTGCTTATTCAN

Query= MSMg01no388_p11.b1 MSMg01no388_p11.b1 CHROMAT_FILE:
MSMg01no388_p11.b1 PHD_FILE: MSMg01no388_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:25 2005
         (339 letters)



>mm_chr1_170473603_170474341
          Length = 739

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttgaacgctagtatctttctttactttaaaaccaattttatctgcttctataaagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttgaacgctagtatctttctttactttaaaaccaattttatctgcttctataaagctg 260

                                                                       
Query: 61  tggtcctattttacttcacaaaaatgataagagtcgatggtggtgatggtgaagctacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcctattttacttcacaaaaatgataagagtcgatggtggtgatggtgaagctacta 320

                                                                       
Query: 121 atgtttctatgttgagaatatacataagttcacaaagagcactatagctgcgttcagcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtttctatgttgagaatatacataagttcacaaagagcactatagctgcgttcagcgg 380

                                                                       
Query: 181 gagccttaaaaccactcagtggagaaagaataagcataggaaaaaaaatccatgtggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagccttaaaaccactcagtggagaaagaataagcataggaaaaaaaatccatgtggagt 440

                                                                       
Query: 241 ctgcagatgaacatgacaatgattttttaaaaaattggtctaacaagtagtaaaaatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcagatgaacatgacaatgattttttaaaaaattggtctaacaagtagtaaaaatgaa 500

                                                 
Query: 301 atgcagtgctctgtcctcagcactacctaaacctacag 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcagtgctctgtcctcagcactacctaaacctacag 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_p11.g1 MSMg01no388_p11.g1 CHROMAT_FILE:
MSMg01no388_p11.g1 PHD_FILE: MSMg01no388_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:25 2005
         (594 letters)



>mm_chr1_170607424_170608417
          Length = 994

 Score =  994 bits (514), Expect = 0.0
 Identities = 535/542 (98%)
 Strand = Plus / Minus

                                                                       
Query: 53  cttccttctttccttccttccttccttccttccttccttccttccttccttccttcctgc 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 cttccttctttccttccttccttccttccttccttccttccttccttccttccttcctgc 935

                                                                       
Query: 113 ctgcctgcctgcctgcctgcctgctttccttcttttcttccctccatttctcctttcttc 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 ctgcctgcctgcctgcctgcctgctttccttcttttcttccctccatttctcctttcttc 875

                                                                       
Query: 173 ttttcctcctttcccccttccttcttccttccttccttattcttccttccttcctttttt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ttttcctcctttcccccttccttcttccttccttccttattcttccttccttcctttttt 815

                                                                       
Query: 233 cctcccttttttttctccttgttcaaagggtaagagagacttctgtatttaatgtgggga 292
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 cctccctcccttttctccttgttcaaagggtaagagagacttctgtatttaatgtgggga 755

                                                                       
Query: 293 atacaggagtcacttaagtactgtagtcagattgatttttgtccacccccgtggatcttc 352
           ||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||
Sbjct: 754 atacaggagtcacttaagtactgtagtcagattgatttttgtctagctctgtggatcttc 695

                                                                       
Query: 353 cactgcaaagtgggttgttgcaagttacttgctgtgattagattctctaccaaatgcaaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cactgcaaagtgggttgttgcaagttacttgctgtgattagattctctaccaaatgcaaa 635

                                                                       
Query: 413 accaaagcctcctctattatcaagaagtcgcttctctcaatggtatttctctaatgatca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 accaaagcctcctctattatcaagaagtcgcttctctcaatggtatttctctaatgatca 575

                                                                       
Query: 473 catattgtttcccaggaagtgctcctcaattatttaggaggaacagcctgtcaccccgcg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 catattgtttcccaggaagtgctcctcaattatttaggaggaacagcctgtcaccccgcg 515

                                                                       
Query: 533 cactaagacgtgactatgcacatccaatccctaagacgcacttgatctcattctttcagc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cactaagacgtgactatgcacatccaatccctaagacgcacttgatctcattctttcagc 455

             
Query: 593 at 594
           ||
Sbjct: 454 at 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)