BAC Information

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BAC

Clone NameMSMg01-389B14
Chromosome1 (Build37)
Map Location 172,844,125 - 172,991,572
singlet/doubletdoublet
Overlap geneFcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
Upstream gene1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb
Downstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389B14.T7 (MSMg01no389_b14.b1)MSMg01-389B14.TJ (MSMg01no389_b14.g1)
ACCAG491435AG491436
length765753
length of high quality
(start - end)		379 (74 - 452)180 (83 - 262)
definitionCHROMAT_FILE: MSMg01no389_b14.b1 PHD_FILE: MSMg01no389_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:35 2005CHROMAT_FILE: MSMg01no389_b14.g1 PHD_FILE: MSMg01no389_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,991,194 - 172,991,572)(172,844,125 - 172,844,302)
sequence
NCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTAACCTCAACACTCCAGTTCCAAGGGATCCAACACTCTTC
TGGACCTTCAGGTACCTGTAGTCACATACTCACACACAGACACCCATATA
AAGATAATTTTAAAATAAGTATTATGAAAACAACCAGTTTCTTATTTTCT
CTTTGGAGTTAATTGAGGGTAAATTGAACATTCTAGCTTGGGCTTTCCTG
CTTATTCAGTCCGAGTGGAATGTGGAGCCTGTGGAGATTTTAATGTTGGA
AGAATAAACGTGAGATTTAAGAGGCTGATGCTTCTTGTGTTGACTGGCAT
AAAATGAAGAAAGATAAGGTACTATACAGAGATAAGAAAATGCCAGAAAA
GTAATAAGACTGTTATAAAGAACACTGTAGTCATCAAGGGTTCCCTCTTG
GTGTCTGTAAGAGAGATTAGGCATAACCTATTAGTCCTGAGTCTGTTAAC
CCCAACTGACCAAGCTAAGGTGCCCCAGAAATCACCCCTTACCCCACACA
AGCCGCCCATTATATACTTTACGTCACAAAAGACCGCATAAGCGTTGGCT
CACTTGGACGCTTTACCCCCGCGCACCGGAATGACCTCGGCTTACCCCTT
CCCTACACTACACTTTTTCCCCTTAATTATCCCCCCCCCTTGTACCCCCC
CCCCCCCTCCCATACTTCCCCCTCCCTCCCCCCTTCTTCCCTTCGCTCCC
CTCTCCCTCCCTTTC

NNNCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCATATTTTCAGTGCA
GTGTGCTTTTTCCCTGTTAAAATACAAATGCATCTGAGGAAAACATGACC
AGTCTTCAATTATGCTGACCTTTTTGGATCTTGCTTTGGAAGCATGATTT
GATTGGAAGAAGGGAGACAGAGGACAGGGGAGAGGGAGAGGGAAAGGGAG
AGAGAGAGTTTTCTTGTANGTCTGANNAGNANGATGGNATNTGATAAGGT
GATNCATNGTAGGGGAGGAGAGAATTTTACATAGTTTAAAGAANGNAAAA
GAAGGAAGAAAAAAGGTTTTTTTTTCCCCCCCCCTCTGGGGGGGCGTGTC
GACATAAGTGTGGAAATTCTCACCCCCCCCACTTTTTGTACTCACGCTCT
GACTTCCGACCGCCCCTTACACCTTCACATCCTTACTTCTCTGAACCTAT
CCTACGCCAATACTTGCTTCTCTCTCTCCTCTCATCCAATCACTCCCTTT
CTTGTCCCTTCCTCTTCCCACCTCCTCTCCCTTCCAATCCTTTGTCCCCT
CTTCCCTCCTTTCCTTCTTCTCTTCCCTGCTCCCCCCTTATTTACTTCTT
CCTCTCTCTACCGCTCTTTTTTTTTTTTTTTTCGAAACCACCGTCCCAAT
TTTCCTTCATTCCAATCTTCATCTATCTCCATTTTATCCAATATTTTTTT
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_b14.b1 MSMg01no389_b14.b1 CHROMAT_FILE:
MSMg01no389_b14.b1 PHD_FILE: MSMg01no389_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:35 2005
         (379 letters)



>mm_chr1_172990994_172991772
          Length = 779

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagttccaagggatccaacactcttctggaccttcaggtacctgtagtcacatactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccagttccaagggatccaacactcttctggaccttcaggtacctgtagtcacatactcac 520

                                                                       
Query: 61  acacagacacccatataaagataattttaaaataagtattatgaaaacaaccagtttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acacagacacccatataaagataattttaaaataagtattatgaaaacaaccagtttctt 460

                                                                       
Query: 121 attttctctttggagttaattgagggtaaattgaacattctagcttgggctttcctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 attttctctttggagttaattgagggtaaattgaacattctagcttgggctttcctgctt 400

                                                                       
Query: 181 attcagtccgagtggaatgtggagcctgtggagattttaatgttggaagaataaacgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 attcagtccgagtggaatgtggagcctgtggagattttaatgttggaagaataaacgtga 340

                                                                       
Query: 241 gatttaagaggctgatgcttcttgtgttgactggcataaaatgaagaaagataaggtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gatttaagaggctgatgcttcttgtgttgactggcataaaatgaagaaagataaggtact 280

                                                                       
Query: 301 atacagagataagaaaatgccagaaaagtaataagactgttataaagaacactgtagtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atacagagataagaaaatgccagaaaagtaataagactgttataaagaacactgtagtca 220

                              
Query: 361 tcaagggttccctcttggt 379
           |||||||||||||||||||
Sbjct: 219 tcaagggttccctcttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_b14.g1 MSMg01no389_b14.g1 CHROMAT_FILE:
MSMg01no389_b14.g1 PHD_FILE: MSMg01no389_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:35 2005
         (180 letters)



>mm_chr1_172843925_172844504
          Length = 580

 Score =  344 bits (178), Expect = 2e-99
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcatattttcagtgcagtgtgctttttccctgttaaaatacaaatgcatctgaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcatattttcagtgcagtgtgctttttccctgttaaaatacaaatgcatctgaggaaa 260

                                                                       
Query: 61  acatgaccagtcttcaattatgctgacctttttggatcttgctttggaagcatgatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgaccagtcttcaattatgctgacctttttggatcttgctttggaagcatgatttga 320

                                                                     
Query: 121 ttggaagaagggagacagaggacaggggagagggagagggaaagggagagagagagtt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggaagaagggagacagaggacaggggagagggagagggaaagggagagagagagtt 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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