BAC Information

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BAC

Clone NameMSMg01-389C06
Chromosome1 (Build37)
Map Location 24,768,478 - 24,964,821
singlet/doubletdoublet
Overlap geneLmbrd1
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389C06.T7 (MSMg01no389_c06.b1)MSMg01-389C06.TJ (MSMg01no389_c06.g1)
ACCAG491467AG491468
length742736
length of high quality
(start - end)
395 (76 - 470)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no389_c06.b1 PHD_FILE: MSMg01no389_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:38 2005CHROMAT_FILE: MSMg01no389_c06.g1 PHD_FILE: MSMg01no389_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,964,497 - 24,964,821)(24,768,478 - 24,768,764)
sequence
CCCCCCCCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTCTTTGTCACTCTCTTCTCCATAAATAAAACATGG
TATTCACAAACTTACATTTCTCTCTTAGTCAAAAATTCCTGTGAAAGTAT
GATATCAACAACAGTGGTCACAATGTTATCAATTTTACCTGTTCTTCTCT
TCTTCCTGAATGAGGTGACCCAGACCCAGAAAGATACTCATGGCATATAT
TCACTTATAAGTGAATATTATGTGTGCTATAATCCATAGACCCAGAGAAG
TGCAGTAACAAGATGGGCTCAAGGGATATTGTAGAATCTCCCTGTGAAGG
AGATAGACATCATGGGTGAATAGCAGGAAGTGTCTTGATGGAGGTGTGCA
CATGGAAACAGGAGGGATCAAGTTAAGGAAAAATGAAGGAAGAGAATACT
ACGAGAGATAACTGGAAATGGGGGAGGGATAAATCTTGGGGACAAGGTAA
AAGCCCAGAGCAGTGAAAACTCCCAGGAAACTATGAGGGCGACCCTAGCT
AACACTTCCAGCAATGGAGAATATGGATCCTGAACTGGCCATCTCCTATA
ACCCAGCAAGACTTCCAGTGCAGGGATTGCCACCCCATTTCGAACTATCT
GCAAAGACGCTGCCAGCCTCACGAACACCTCCATTACATTGCCTTATGAC
CAACCTTGCGGTCCCCCGCTTTTCCCCACGACTGCCCTCGAC
NNCCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACTTTGCATTTTTTTGGAAATT
TATGAAGATTAGCCAGTTTTTAGTTGTCTAAGGACTTAGCTCTACCGTTC
TGTACTTCGGTGAGGAGGTTTACACTGTTAAAGCTGCCTTCCGGCCGTTA
CATAGGCAGCTTTTCATTTCTACGGAGAGGTACCTGTTAAAGAGGCGCTT
TAATGTACAAAGGATTTTAATGGGCTTGGTATTTTAATGTGATCTTTAAT
TCCTTATGATAATGTGCAATAATATGTTATTGAAATGTGCTGGGCATAGA
TTTTTATTTAAAAATTTTATTACGACAATGCTCTATCATGCTACTAAAGA
TAAAGTAATATTGAGAAAGCAAATTATAAGTTATGTAAGAATTAAATCCC
GTTTTACTGTAGATTTATGGGACTACAATATGCCCACCTTGCCTTTATTG
AAAATCTGGAAAAATTAAAACTTAAGTCCCACTGGATTGAGCTTAACACC
ATTCTCCTTTTTAACATTTTAATTTCCCCCTAATTCTTATCTTCCCCCCT
TGTGGGGGTAAAACCCCTTTCCCCTTATCTCTCTCTTTCCTCCCTCTGCG
CGTCCCTGGGTCCCACACATATGGTTTCTGCGCCCAACTCCTTTGTCTTC
ACTTTGCGGTGCTCTTCTCAATCTTTCTTTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_c06.b1 MSMg01no389_c06.b1 CHROMAT_FILE:
MSMg01no389_c06.b1 PHD_FILE: MSMg01no389_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:38 2005
         (395 letters)



>mm_chr1_24964497_24965291
          Length = 795

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttctccataaataaaacatggtattcacaaacttacatttctctcttagtcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcttctccataaataaaacatggtattcacaaacttacatttctctcttagtcaaaaa 266

                                                                       
Query: 61  ttcctgtgaaagtatgatatcaacaacagtggtcacaatgttatcaattttacctgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctgtgaaagtatgatatcaacaacagtggtcacaatgttatcaattttacctgttct 206

                                                                       
Query: 121 tctcttcttcctgaatgaggtgacccagacccagaaagatactcatggcatatattcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctcttcttcctgaatgaggtgacccagacccagaaagatactcatggcatatattcact 146

                                                                       
Query: 181 tataagtgaatattatgtgtgctataatccatagacccagagaagtgcagtaacaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tataagtgaatattatgtgtgctataatccatagacccagagaagtgcagtaacaagatg 86

                                                                       
Query: 241 ggctcaagggatattgtagaatctccctgtgaaggagatagacatcatgggtgaatagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ggctcaagggatattgtagaatctccctgtgaaggagatagacatcatgggtgaatagca 26

                                    
Query: 301 ggaagtgtcttgatggaggtgtgca 325
           |||||||||||||||||||||||||
Sbjct: 25  ggaagtgtcttgatggaggtgtgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no389_c06.g1 MSMg01no389_c06.g1 CHROMAT_FILE:
MSMg01no389_c06.g1 PHD_FILE: MSMg01no389_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:39 2005
         (287 letters)



>mm_chr1_24768278_24768964
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactttgcatttttttggaaatttatgaagattagccagtttttagttgtctaaggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactttgcatttttttggaaatttatgaagattagccagtttttagttgtctaaggact 260

                                                                       
Query: 61  tagctctaccgttctgtacttcggtgaggaggtttacactgttaaagctgccttccggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctctaccgttctgtacttcggtgaggaggtttacactgttaaagctgccttccggcc 320

                                                                       
Query: 121 gttacataggcagcttttcatttctacggagaggtacctgttaaagaggcgctttaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttacataggcagcttttcatttctacggagaggtacctgttaaagaggcgctttaatgt 380

                                                                       
Query: 181 acaaaggattttaatgggcttggtattttaatgtgatctttaattccttatgataatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaggattttaatgggcttggtattttaatgtgatctttaattccttatgataatgtg 440

                                                          
Query: 241 caataatatgttattgaaatgtgctgggcatagatttttatttaaaa 287
           |||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 441 caataatatgttaaagaaatgtgctgggcatagatttttatttaaaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)