BAC Information

Click to search

BAC

Clone NameMSMg01-389C12
Chromosome1 (Build37)
Map Location 142,267,761 - 142,268,239
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389C12.T7 (MSMg01no389_c12.b1)MSMg01-389C12.TJ (MSMg01no389_c12.g1)
ACCAG491479AG491480
length776744
length of high quality
(start - end)
147 (169 - 315)479 (84 - 562)
definitionCHROMAT_FILE: MSMg01no389_c12.b1 PHD_FILE: MSMg01no389_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:40 2005CHROMAT_FILE: MSMg01no389_c12.g1 PHD_FILE: MSMg01no389_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTCTATAATTTGCGCGCGCTAAAAGAATCACTACTCCCAGAGGATCCG
CGGAATTCCTGATCTCGCTTCTATAAAACCCCCTAGACAAGGGGTCGCAC
TGCTGTGGGAAGGTTTGTGATCCGAATCTTATTCGAATTAATAAAAGACT
CTGTTGTTTCACGACATCGGGTCAGCAGTTCTTAGAGTTCTCTTGGGGAT
CCTGCTGTGACCTGGATACAACGCAACAGTTGTTGTTGTTGTTGTTGTAT
CTTTGTTTGTTTATTTGTTTATTTTGTTCTAGAGAGTATGGGACGCATAT
TGTCTTAATTTTCCATACTGTTTGTATATTTCTGTTGGGACCAGTGCATA
TACCATTACATCATTGGTGCTGCCTTTTGATATGAGCTTCTGCACTAACA
TACACCAACTCTTTATGTTGAATGAGCAGCTGGATCTGTCTTTCTCTTAC
CTTTACTTGGCTAGCTCAGAGCCTAGCATACCGCACACCTCCTCACCTAC
GACAACCCTACGCTCCTTGCCGCACCTCCGACTGCCTCCTACTTACCCCT
ACACGCTTCCCCCCTCCCCCATTCTTCCCCCTCACCTACCGATCACTGCC
TTCCGCCACTCCGCCCTCGCCAACCTGCCTGCCCCTTCTCCTCTCTTTCC
CCACCCCCCTCCCTTCTTTTCCCCCTCCCCTCCGCCTCCTCCCCCCTCTC
CCCCCTTCCCCTCCCCTCCCCTCCCTTCCCCCCCTCTCTTTTTCCCCCCC
CTTTCTCCCCCCTTCCTTCCCCCTTC
CCCCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGGCAGGCCCAC
TAGGAATTCCTAATGGCCAGTAAAACTCATGGATACTTCTAATACTTATT
TATATTAACTAATTTAGGGAAGATAATTCACATATGCATCACTTAGTTTA
GAAGATAACCTGAGATCTGAGAATTAATGAAACCGAATATAACTGAAAAT
ATCTGTTTATTTTTACCCACAAACACATTATTCCTCTATACAATTTAACT
ATGAAAATTAGTCCTTAGTGGGGAAATTCTTTCTGTTGCTGCAACACACA
CACACCAAGCAACTCCTGTTCCCCAACACACAATGAATCAGCCATGGTGT
GGTTGGCATAACGTCTTTATTCAATGATGGCATTGAAGCACTTGTGTGAG
GAACAGATCAAACCGTCTTAACCTGTGTTTATGTTGACTCTCACTGTGTG
GTTTCAATTTAAAAAGAAAAATAAAGTAAGGATAGAGCGCTCGTACACTC
CAACTAGGTAGTGCATTTGTACAATAATAGCCCCTTTTCTTGTTAAAGTG
TGTGAATAGTTGAAGAGTTTTAAGGGAGTGGGGTGAAGGTTACTTGCCCG
GNTCTCTGGCAAGGTTGTTTGTTACTAAAGGCCCGTTTGGCCGTGGTCCC
AAAATTTCTCTCTGCTCCCCTTCGTGGGGCCTCTCCTTCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_c12.g1 MSMg01no389_c12.g1 CHROMAT_FILE:
MSMg01no389_c12.g1 PHD_FILE: MSMg01no389_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:40 2005
         (479 letters)



>mm_chr1_142267561_142268439
          Length = 879

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaggcaggcccactaggaattcctaatggccagtaaaactcatggatacttctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgaggcaggcccactaggaattcctaatggccagtaaaactcatggatacttctaat 260

                                                                       
Query: 61  acttatttatattaactaatttagggaagataattcacatatgcatcacttagtttagaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttattcatattaactaatttagggaagataattcacatatgcatcacttagtttagaa 320

                                                                       
Query: 121 gataacctgagatctgagaattaatgaaaccgaatataactgaaaatatctgtttatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataacctgagatctgagaattaatgaaaccgaatataactgaaaatatctgtttatttt 380

                                                                       
Query: 181 tacccacaaacacattattcctctatacaatttaactatgaaaattagtccttagtgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacccacaaacacattattcctctatacaatttaactatgaaaattagtccttagtgggg 440

                                                                       
Query: 241 aaattctttctgttgctgcaacacacacacaccaagcaactcctgttccccaacacacaa 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattcattcagttgctgcaacacacacacaccaagcaactcctgttccccaacacacaa 500

                                                                       
Query: 301 tgaatcagccatggtgtggttggcataacgtctttattcaatgatggcattgaagcactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaatcagccatggtgtggttggcataacgtctttattcaatgatggcattgaagcactt 560

                                                                       
Query: 361 gtgtgaggaacagatcaaaccgtcttaacctgtgtttatgttgactctcactgtgtggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgaggaacagatcaaaccgtcttaacctgtgtttatgttgactctcactgtgtggtt 620

                                                                      
Query: 421 tcaatttaaaaagaaaaataaagtaaggatagagcgctcgtacactccaactaggtagt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaatttaaaaagaaaaataaagtaaggatagagcgctcgtacactccaactaggtagt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)