MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-389D17
Chromosome	1 (Build37)
Map Location	87,343,685 - 87,344,187
singlet/doublet	singlet
Overlap gene	none
Upstream gene	none
Downstream gene	LOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040213 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 15 ESTs, 4 Proteins

name	LOC100039794 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 3 Proteins

name	EG665338 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665338 MGI:3644077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs

name	Sp110 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109032 MGI:1923364
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sp140 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434484 MGI:3702467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sp100 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20684 MGI:109561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A630001G21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319997 MGI:2443131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 46 ESTs, 2 Proteins

name	Cab39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12283 MGI:107438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itm2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64294 MGI:1927594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933407L21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71141 MGI:1918391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	Gpr55 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227326 MGI:2685064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spata3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70060 MGI:1917310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	2810459M11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72792 MGI:1920042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs

name	Psmd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70247 MGI:1917497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15559 MGI:109323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Armc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78795 MGI:1926045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	B3gnt7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227327 MGI:2384394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG383538 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383538 MGI:3647794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Ncl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17975 MGI:97286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snord82 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80828 MGI:1931502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nmur1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14767 MGI:1341898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019O17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71863 MGI:1919113
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 3 Proteins

name	LOC100040213 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234191 GeneID:100040213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 14 ESTs, 4 Proteins product : similar to putative G-protein coupled receptor, transcript variant 2 transcript_id : XM_001474245.1

name	LOC100040213 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234189 GeneID:100040213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 4 Proteins product : similar to putative G-protein coupled receptor, transcript variant 1 transcript_id : XM_001474231.1

name	LOC100039794 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234181 GeneID:100039794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 3 Proteins product : similar to SP140 nuclear body protein family member transcript_id : XM_001473524.1

name	EG665338 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234187 GeneID:665338 MGI:3644077
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs product : predicted gene, EG665338, transcript variant 2 transcript_id : XM_979370.2

name	Sp110 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893021 GeneID:109032 MGI:1923364
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Sp110 nuclear body protein transcript_id : NM_175397.4

name	Sp140 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126215540 GeneID:434484 MGI:3702467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Sp140 nuclear body protein transcript_id : NM_001013817.2

name	Sp100 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803419 GeneID:20684 MGI:109561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear antigen Sp100 transcript_id : NM_013673.3

name	A630001G21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363793 GeneID:319997 MGI:2443131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 35 ESTs, 2 Proteins product : RIKEN cDNA A630001G21 gene, transcript variant 3 transcript_id : XM_895419.2

name	A630001G21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363794 GeneID:319997 MGI:2443131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 46 ESTs, 2 Proteins product : RIKEN cDNA A630001G21 gene, transcript variant 1 transcript_id : XM_484889.4

name	Cab39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982581 GeneID:12283 MGI:107438
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium binding protein 39 transcript_id : NM_133781.2

name	Itm2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386544 GeneID:64294 MGI:1927594
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integral membrane protein 2C transcript_id : NM_022417.2

name	4933407L21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363800 GeneID:71141 MGI:1918391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs product : RIKEN cDNA 4933407L21 gene transcript_id : XM_976810.1

name	Gpr55 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111185937 GeneID:227326 MGI:2685064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 55 transcript_id : NM_001033290.2

name	Spata3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22208835 GeneID:70060 MGI:1917310
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated 3 transcript_id : NM_027029.1

name	Spata3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803477 GeneID:70060 MGI:1917310
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated 3 transcript_id : NM_028647.2

name	Spata3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801662 GeneID:70060 MGI:1917310
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated 3 transcript_id : NM_027300.2

name	2810459M11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363804 GeneID:72792 MGI:1920042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs product : RIKEN cDNA 2810459M11 gene transcript_id : XM_484890.4

name	Psmd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351621 GeneID:70247 MGI:1917497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 transcript_id : NM_027357.2

name	Htr2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130975 GeneID:15559 MGI:109323
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 2B transcript_id : NM_008311.2

name	Armc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637816 GeneID:78795 MGI:1926045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : armadillo repeat containing 9 transcript_id : NM_030184.2

name	Armc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637814 GeneID:78795 MGI:1926045
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : armadillo repeat containing 9 transcript_id : NM_027456.1

name	B3gnt7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21644580 GeneID:227327 MGI:2384394
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 transcript_id : NM_145222.1

name	EG383538 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363806 GeneID:383538 MGI:3647794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG383538 transcript_id : XM_357111.4

name	Ncl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875536 GeneID:17975 MGI:97286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleolin transcript_id : NM_010880.3

name	Nmur1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7110606 GeneID:14767 MGI:1341898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuromedin U receptor 1 transcript_id : NM_010341.1

name	1700019O17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363802 GeneID:71863 MGI:1919113
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 2 Proteins product : RIKEN cDNA 1700019O17 gene, transcript variant 1 transcript_id : XM_484891.3

name	1700019O17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363803 GeneID:71863 MGI:1919113
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins product : RIKEN cDNA 1700019O17 gene, transcript variant 2 transcript_id : XM_895919.2

name	LOC100040213 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234190 GeneID:100040213
definition	codon_start : 1 product : similar to putative G-protein coupled receptor isoform 1 protein_id : XP_001474281.1

name	LOC100040213 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234192 GeneID:100040213
definition	codon_start : 1 product : similar to putative G-protein coupled receptor isoform 2 protein_id : XP_001474295.1

name	LOC100039794 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234182 GeneID:100039794
definition	codon_start : 1 product : similar to SP140 nuclear body protein family member protein_id : XP_001473574.1

name	EG665338 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234188 GeneID:665338 MGI:3644077
definition	codon_start : 1 product : similar to HSR isoform 2 protein_id : XP_984464.2

name	Sp110 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133893022 GeneID:109032 MGI:1923364
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0009617 - response to bacterium [Evidence IDA] codon_start : 1 note : interferon-induced protein 75; interferon-induced protein 75, 52kD; intracellular pathogen resistance 1 product : Sp110 nuclear body protein protein_id : NP_780606.3

name	Sp140 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62000674 GeneID:434484 MGI:3702467
definition	codon_start : 1 product : SP140 nuclear body protein family member protein_id : NP_001013839.1

name	Sp100 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249354 GeneID:20684 MGI:109561
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : nuclear antigen Sp100 protein_id : NP_038701.2

name	A630001G21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63475945 GeneID:319997 MGI:2443131
definition	codon_start : 1 product : hypothetical protein LOC319997 isoform 1 protein_id : XP_484889.2

name	A630001G21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82880879 GeneID:319997 MGI:2443131
definition	codon_start : 1 product : hypothetical protein LOC319997 isoform 3 protein_id : XP_900512.1

name	Cab39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982582 CCDS:CCDS15112.1 GeneID:12283 MGI:107438
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence ISS] codon_start : 1 exception : mismatches in translation note : calcium binding protein, 39 kDa product : MO25 protein protein_id : NP_598542.2

name	Itm2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11967943 GeneID:64294 MGI:1927594
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence TAS] GO_function : GO:0005524 - ATP binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : unclassified translation discrepancy function : expression of this gene product inhibits the growth of E. coli note : integral membrane protein 3 product : integral membrane protein 2C protein_id : NP_071862.1

name	4933407L21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363801 GeneID:71141 MGI:1918391
definition	codon_start : 1 product : hypothetical protein LOC71141 protein_id : XP_981904.1

name	Gpr55 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111185938 CCDS:CCDS15115.1 GeneID:227326 MGI:2685064
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 55 protein_id : NP_001028462.2

name	Spata3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312528 GeneID:70060 MGI:1917310
definition	codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; testis and spermatogenesis cell apoptosis related gene 1 product : testis and spermatogenesis cell apoptosis related protein 1 isoform 2 protein_id : NP_081576.1

name	Spata3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22208842 CCDS:CCDS15116.1 GeneID:70060 MGI:1917310
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3; testis and spermatogenesis cell apoptosis related gene 1 product : testis and spermatogenesis cell apoptosis related protein 1 isoform 3 protein_id : NP_082923.1

name	Spata3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22208836 GeneID:70060 MGI:1917310
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; testis and spermatogenesis cell apoptosis related gene 1 product : testis and spermatogenesis cell apoptosis related protein 1 isoform 1 protein_id : NP_081305.1

name	2810459M11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82880946 GeneID:72792 MGI:1920042
definition	codon_start : 1 product : hypothetical protein LOC72792 protein_id : XP_484890.3

name	Psmd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74315975 CCDS:CCDS15117.1 GeneID:70247 MGI:1917497
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 product : proteasome 26S non-ATPase subunit 1 protein_id : NP_081633.1

name	Htr2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118130976 GeneID:15559 MGI:109323
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004993 - serotonin receptor activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007507 - heart development [Evidence IMP]; GO:0007208 - serotonin receptor, phospholipase C activating pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : 5-hydroxytryptamine (serotonin) receptor 2B protein_id : NP_032337.2

name	Armc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313490 CCDS:CCDS15118.1 GeneID:78795 MGI:1926045
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : armadillo repeat containing 9 isoform 1 protein_id : NP_084460.1

name	Armc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119637815 GeneID:78795 MGI:1926045
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : armadillo repeat containing 9 isoform 2 protein_id : NP_081732.1

name	B3gnt7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21644581 GeneID:227327 MGI:2384394
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence ISS]; GO:0008378 - galactosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence ISS] [Evidence IEA] codon_start : 1 exception : mismatches in translation product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein_id : NP_660257.1

name	EG383538 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363807 GeneID:383538 MGI:3647794
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357111.4

name	Ncl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875537 GeneID:17975 MGI:97286
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : nucleolin protein_id : NP_035010.3

name	Nmur1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7110607 CCDS:CCDS15119.1 GeneID:14767 MGI:1341898
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008188 - neuropeptide receptor activity [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007218 - neuropeptide signaling pathway [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : alternative start codon product : G protein-coupled receptor 66 protein_id : NP_034471.1 transl_except : (pos:complement(88284714..88284716),aa:Met)

name	1700019O17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51705178 GeneID:71863 MGI:1919113
definition	codon_start : 1 product : hypothetical protein LOC71863 isoform 1 protein_id : XP_484891.1

name	1700019O17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82880884 GeneID:71863 MGI:1919113
definition	codon_start : 1 product : hypothetical protein LOC71863 isoform 2 protein_id : XP_901012.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128693
definition	standard_name : D1Mit335

name	(CDS detail)
type	STS
link
xref	UniSTS:207185
definition	standard_name : BB236200

name	(CDS detail)
type	STS
link
xref	UniSTS:207183
definition	standard_name : BE688095

name	(CDS detail)
type	STS
link
xref	UniSTS:207182
definition	standard_name : AW822418

name	(CDS detail)
type	STS
link
xref	UniSTS:207186
definition	standard_name : BB230852

name	(CDS detail)
type	STS
link
xref	UniSTS:207184
definition	standard_name : BE692148

name	(CDS detail)
type	STS
link
xref	UniSTS:225139
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128939
definition	standard_name : D1Mit81

name	(CDS detail)
type	STS
link
xref	UniSTS:210259
definition	standard_name : RH136266

name	(CDS detail)
type	STS
link
xref	UniSTS:165085
definition	standard_name : C78372

name	(CDS detail)
type	STS
link
xref	UniSTS:161592
definition	standard_name : RH124770

name	(CDS detail)
type	STS
link
xref	UniSTS:162566
definition	standard_name : RH125821

name	(CDS detail)
type	STS
link
xref	UniSTS:211834
definition	standard_name : RH128526

name	(CDS detail)
type	STS
link
xref	UniSTS:158821
definition	standard_name : AA960512

name	(CDS detail)
type	STS
link
xref	UniSTS:234167
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158820
definition	standard_name : AU041202

name	(CDS detail)
type	STS
link
xref	UniSTS:162073
definition	standard_name : RH125251

name	(CDS detail)
type	STS
link
xref	UniSTS:152977
definition	standard_name : D11S3747

name	(CDS detail)
type	STS
link
xref	UniSTS:178426
definition	standard_name : AV377389

name	(CDS detail)
type	STS
link
xref	UniSTS:163256
definition	standard_name : AJ012488

name	(CDS detail)
type	STS
link
xref	UniSTS:143423
definition	standard_name : Htr2b

name	(CDS detail)
type	STS
link
xref	UniSTS:495966
definition	standard_name : Htr2b

name	(CDS detail)
type	STS
link
xref	UniSTS:128941
definition	standard_name : D1Mit83

name	(CDS detail)
type	STS
link
xref	UniSTS:185445
definition	standard_name : AA986695

name	(CDS detail)
type	STS
link
xref	UniSTS:257487
definition	standard_name : px-26e2

name	(CDS detail)
type	STS
link
xref	UniSTS:142252
definition	standard_name : D1Mit516

name	(CDS detail)
type	STS
link
xref	UniSTS:143994
definition	standard_name : Ncl

name	(CDS detail)
type	STS
link
xref	UniSTS:128779
definition	standard_name : D1Mit415

name	(CDS detail)
type	STS
link
xref	UniSTS:492179
definition

name	Snord82 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84872143 GeneID:80828 MGI:1931502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nucleolar RNA, C/D box 82 transcript_id : NR_002851.1

clone name	MSMg01-145K03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-177I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-389D17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-288M20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-522O12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-493N08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-133L11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-426G01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-446M11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-329H11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-449I20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-317M13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-059D10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-079I24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-535G14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-406F03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-476B21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-331G01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-375O10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-157I12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-375O10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-408I19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-421M01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-304K02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-124I15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-111F01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-139C07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-139L16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-185D24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-458A24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-469E19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-143K01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-131M17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-295M15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-479N08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-145H02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-099H19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-055C03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-391K23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-421M01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-355N07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-327I05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-352G24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-371G20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-390J16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-397G17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-433B13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-066E06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-134O24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-412G09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-088G21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-085I23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-443K13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-317M13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-068L19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-446M11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-266P13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-296I06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-058N16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-204K08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-069O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098H23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-389D17.T7 (MSMg01no389_d17.b1)	MSMg01-389D17.TJ (MSMg01no389_d17.g1)
ACC	AG491537	AG491538
length	846	758
length of high quality (start - end)	---	503 (80 - 582)
definition	CHROMAT_FILE: MSMg01no389_d17.b1 PHD_FILE: MSMg01no389_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:46 2005	CHROMAT_FILE: MSMg01no389_d17.g1 PHD_FILE: MSMg01no389_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:46 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	plural
sequence	CATAATTTGCNNCCCCTATACNACTCACTATATTTCACAAATCCCGCGAA ATTCCATGATCTTTGCCCACACTGTCGTACTTCTCTTGGTGTGAAATGAA GTTCTTGGTCAAAAANNNNATGGTGCTGACATAGCATGATGAAGAGGGAG GATGTGGTGAGTGGGGGGATGCGGTGTGTAAGAGNATTTGTGAGAGGGNN NTACTGNTTNNNAACTAAAANNNAATTNNNTATTTCATAAAAAAAAAAAA TTTGTCTTTTTCACAAANNAAAGGCCAATATAAATAAATGTGCCAAAAAT TTTGGGCTGGCACCTTAATATATTTCCCAAATTTTGGCCTAAAGTTTTTT TTTCTTTTTTTAAAATTTCCTAAAAAAAAACTTTTTATACTCTTTTTTTT TTTAAGAAAAACCTTTTTTTTTAAAAAAAAAAAAACATTTCTTNTTTAAC AAACCTCCTTTTTTTTTTTTTCTTTTTTAAAAAAAAAAAATTATTTTTTT AAAAAAAAAATTTTCTCTTCCAAAAAACCNNTTTAATTCTAATTATAAAA TTAAAATTTCCTCTCAAAAACATAATTTTTTTCCTATATCTTTTCCCACA CAAAACAAAATATCTCGTTTTCTTTTTATTATAAAAAAAAAAAAAACCTT TTTCTTTTTCCCCTTTCCCTTCTTTTTTTTATTTTTCTTTCCTTTTCTTT CCCTTTCTTCCTCTTCCTTTTCCTTTTTTTCTCTCCCTTCAAACCAATTT AACATTTTTTTTCTTTCCTCACTTCTTTATTTTCTTCCCCTTTTCCTCCC TTCCCTTTCTCTCTCCTACCTTATCATCCTTGGCGTGTGTATGTTG	NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTGTCCTCATTCTGATAA GACTTTATTGAAAGCCTGGTTCATGTGGAACGTGTGAGGTATTTTCAGCC ACTTCAACTGTAGCAATCTCCCTTCTACACCTTGTGACACTCTCTTTCTA ACTTGTAACAGTTGCAGAAGGCATGAGTCATTGCAATTCCTAGACATAGC CTCCCCATAATATGCAAACCATTATCCCAAGGTGCCCCCCAGTGTTCGTT TCCTCCTCTGGGTATCCAGGCTCATTACTCTCCAACTAAACGGGGGCAGG TTGGTGCAATACAGGATCTTAGTTGATGGTGAGAGCACAAGAAACAAACC GCTTTCTCAGGAGACAGCTCCTTTAATTGGAGCAGAAGAAAGGCCATTTA TATCTTTGGGGAATGGGTAGAGGCTTTTGAGGGGAATAGACATCATTGAC CAGAGCCAGGGTTCTGGGAATGCCTTATTTGCATGAAGAGGAATCCCAGG TGCTTGCCAAATGTGACCTTATAAGGAGAGAGGAAGTTGAACCTGTAACC TGNCTGCCAGGCTAAAGGGCCACCTCAGGGTTGGCAGAGGTTGGGAGTGT AAAGCTACCTGGAACTGTACTTGCAGGCCCCACGGCAGGAAAGGAAAATC CCTATTCCCTGCTGGGCTCAAAAGAGAATTTTGGGGGGTGGGAAATACCT GACTCTCC
quality values	Open. Hide. 19 19 19 19 26 26 21 16 17 3 0 0 3 27 21 32 24 24 19 18 3 0 3 14 14 25 25 30 25 26 16 20 11 13 9 9 9 9 7 15 6 6 6 7 7 6 6 6 7 7 12 19 19 10 9 9 17 19 17 7 7 7 12 8 8 10 10 9 9 9 9 9 12 23 13 13 16 18 27 15 15 10 9 8 8 8 10 10 11 21 22 16 11 12 11 9 14 8 8 8 8 8 8 8 14 16 9 7 6 6 6 6 6 8 3 0 0 0 0 3 11 8 8 6 6 6 6 8 10 13 15 11 11 9 9 9 11 10 9 9 9 9 8 6 6 6 6 6 6 6 7 6 6 6 7 10 10 13 8 8 8 8 6 6 6 7 7 6 6 6 6 6 8 8 9 9 6 6 6 7 6 6 9 3 0 3 9 9 9 9 7 6 6 6 6 6 6 3 0 0 0 3 6 8 8 3 0 3 3 0 0 0 3 8 6 6 6 6 6 3 0 0 0 3 6 6 3 0 0 0 3 10 8 12 10 10 10 8 6 8 9 9 9 21 39 17 17 11 11 11 10 10 8 8 7 7 9 15 16 16 10 10 10 11 9 19 3 0 0 3 7 7 9 9 9 9 6 6 6 6 6 6 8 8 8 8 8 7 9 6 6 6 8 8 8 11 8 13 18 12 14 13 10 10 9 9 9 7 8 8 8 8 8 11 10 10 9 6 6 6 6 6 6 6 6 9 9 9 9 9 8 8 8 9 8 8 9 13 9 7 10 9 9 9 9 13 13 34 30 22 9 9 9 9 9 9 14 19 14 14 11 8 8 8 8 10 9 8 8 7 7 8 10 9 9 11 11 9 11 8 8 10 12 12 7 7 6 7 8 8 10 10 11 9 10 12 7 9 6 6 6 7 7 11 7 7 7 10 12 15 10 8 8 8 9 9 9 9 9 11 20 18 20 15 20 22 22 20 18 31 31 39 21 16 9 8 8 10 10 8 8 8 3 0 3 6 6 6 6 6 6 8 6 9 9 12 19 13 15 16 19 19 19 22 44 37 37 17 15 13 8 8 8 9 9 11 22 17 14 13 19 15 22 23 18 19 22 15 16 12 8 8 8 8 9 13 9 11 9 8 11 19 16 14 20 17 22 18 16 20 16 15 13 13 9 9 9 10 12 9 10 10 14 19 9 9 8 8 3 0 0 3 9 9 9 11 11 9 9 9 10 9 8 6 6 6 8 6 6 6 6 6 6 11 8 19 12 15 15 14 16 11 11 11 11 11 10 11 11 11 8 8 10 8 8 8 8 8 19 16 18 12 12 10 10 10 10 10 8 9 9 14 19 13 11 11 10 10 8 6 6 6 13 11 6 6 6 11 15 11 11 8 8 8 8 8 8 8 9 12 11 15 14 16 10 15 8 8 8 13 10 19 16 19 15 11 11 14 9 9 9 9 10 8 12 10 10 10 15 15 10 7 6 6 6 9 18 18 21 16 17 15 21 10 10 9 12 12 10 16 9 9 9 12 13 37 37 21 16 9 9 9 15 17 26 25 14 10 17 10 12 9 15 15 15 12 12 10 7 7 7 7 13 22 32 30 30 18 17 12 18 15 9 8 8 8 8 10 9 9 13 10 20 13 9 9 9 9 9 14 24 27 27 31 31 34 36 19 16 10 8 12 7 7 8 8 10 8 8 8 6 7 7 7 8 12 17 22 30 24 25 18 15 15 19 15 10 10 13 8 8 8 10 9 25 19 7 6 6 6 6 7 6 7 8 8 8 15 9 9 8 9 6 6 8 13 7 10 11 8 9 9 8 7 7 7 15 13 9 9 9 9 6 6 6 10 9 10 11 9 9 9 9 8 8 8 8 8 8 9 11 8 8 8 8 6 6 6 6 6 8 10 10 10 10 10	Open. Hide. 0 0 0 0 0 3 7 7 15 19 16 9 9 9 16 27 41 39 39 37 32 24 34 20 23 23 15 12 18 23 21 25 25 25 30 25 22 11 9 9 11 12 10 10 10 16 17 17 26 21 32 23 23 12 12 12 27 27 59 59 59 50 28 27 13 9 10 10 10 9 12 18 21 15 18 24 24 31 36 48 57 57 59 59 59 59 59 47 47 47 47 47 48 57 48 48 48 44 68 68 57 57 57 57 57 57 57 68 68 68 68 57 59 48 48 43 46 43 48 57 47 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 51 68 68 68 51 50 48 47 47 47 57 48 57 57 57 57 57 57 57 57 59 68 68 68 68 68 50 50 50 50 50 57 59 59 59 59 59 57 57 52 52 52 52 57 57 52 57 57 68 57 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 68 68 68 68 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 54 54 54 54 54 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 50 50 50 59 59 59 41 37 17 12 8 8 8 8 8 8 18 24 34 39 48 50 53 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 57 57 48 54 44 44 44 54 54 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 59 59 68 59 57 57 57 43 46 57 59 57 68 68 57 57 57 54 59 57 59 59 59 68 68 68 68 68 68 59 59 57 54 54 57 57 57 57 57 59 59 57 48 48 57 57 57 59 68 59 59 59 59 68 59 59 59 68 68 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 47 47 47 39 47 48 48 43 41 40 40 39 39 39 39 30 29 28 28 34 34 37 37 41 43 43 59 43 39 39 39 32 39 40 41 30 30 30 25 25 32 37 41 41 47 41 41 41 47 41 39 36 23 28 23 28 28 36 31 41 41 34 34 28 24 30 34 41 47 34 39 28 22 22 22 22 25 34 30 28 28 28 24 26 32 37 37 34 29 29 26 28 22 22 18 22 22 24 24 24 16 19 15 15 25 24 25 25 18 23 17 26 26 23 21 14 18 3 0 3 20 23 25 25 16 14 14 19 24 25 36 32 32 32 18 18 11 11 11 13 17 11 11 11 12 13 15 17 22 13 20 11 9 9 9 9 10 12 21 19 19 10 10 9 9 8 8 9 9 8 8 11 15 11 12 15 8 9 9 10 13 10 10 9 8 8 10 11 8 10 11 11 14 14 7 7 6 6 6 6 18 10 10 9 9 9 11 12 12 13 12 9 8 8 8 8 8 9 9 8 8 8 8 8 8 9 9 9 11 12 12 8 8 8 8 11 8 18 6 8 6 6 6 7 8 10 8 7 8 9 8 9 8 8 8 8 8 9 8 7 6 6 6 10 8 8 8 10 9 10 10 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no389_d17.g1 MSMg01no389_d17.g1 CHROMAT_FILE:
MSMg01no389_d17.g1 PHD_FILE: MSMg01no389_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:46 2005
         (503 letters)



>mm_chr1_87343485_87344387
          Length = 903

 Score =  872 bits (451), Expect = 0.0
 Identities = 490/503 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtgtcctcattctgataagactttattgaaagcctggttcatgtggaacgtgtgagg 60
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 201 cttgtgtcctcagtctgataagactttattgaaagcctggttcatatggaacgtgtgaga 260

                                                                       
Query: 61  tattttcagccacttcaactgtagcaatctcccttctacaccttgtgacactctctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttcagccacttcaactgtagcaatctcccttctacaccttgtgacactctctttct 320

                                                                       
Query: 121 aacttgtaacagttgcagaaggcatgagtcattgcaattcctagacatagcctccccata 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgtaacagttgcagaaggtatgagtcattgcaattcctagacatagcctccccata 380

                                                                       
Query: 181 atatgcaaaccattatcccaaggtgccccccagtgttcgtttcctcctctgggtatccag 240
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 atatgcaaaccattatcacaaggtgccgcccagtgttcgtttcctcctctgggtatccag 440

                                                                       
Query: 241 gctcattactctccaactaaacgggggcaggttggtgcaatacaggatcttagttgatgg 300
           ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gctcattacacaccaactaaatgggggcaggtaggtgcaatacaggatcttagttgatgg 500

                                                                       
Query: 301 tgagagcacaagaaacaaaccgctttctcaggagacagctcctttaattggagcagaaga 360
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagagcacaagaaacaaacagccttctcaggagacagctcctttaattggagcagaaga 560

                                                                       
Query: 361 aaggccatttatatctttggggaatgggtagaggcttttgaggggaatagacatcattga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggccatttatatctttggggaatgggtagaggcttttgaggggaatagacatcattga 620

                                                                       
Query: 421 ccagagccagggttctgggaatgccttatttgcatgaagaggaatcccaggtgcttgcca 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 ccagagccagggttctgggaatgccttatttacatgaagaggaatcccaggtgcttgcca 680

                                  
Query: 481 aatgtgaccttataaggagagag 503
           |||||||||||||||||||||||
Sbjct: 681 aatgtgaccttataaggagagag 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information