BAC Information

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BAC

Clone NameMSMg01-389G01
Chromosome1 (Build37)
Map Location 144,761,502 - 144,891,757
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389G01.T7 (MSMg01no389_g01.b1)MSMg01-389G01.TJ (MSMg01no389_g01.g1)
ACCAG491647AG491648
length751741
length of high quality
(start - end)
139 (227 - 365)518 (83 - 600)
definitionCHROMAT_FILE: MSMg01no389_g01.b1 PHD_FILE: MSMg01no389_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:57 2005CHROMAT_FILE: MSMg01no389_g01.g1 PHD_FILE: MSMg01no389_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,761,502 - 144,761,603)(144,891,240 - 144,891,757)
sequence
CCCCCTCTATACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTAACATTTCCAGTATAATTCCTCTGAGATGGTTTATACCG
TTATCAATGACATGCATTCATTAAATTTAGGACAGTCTCCAAAATCCCGA
CTGAGAGTAAAGAAATAAATGTCATTACTATGGAGCACAGTGAGATAAAT
GGTATATATCAGGTCAAATAGAGAAGAGATTAAAGATACTGGGGGAATAA
TTTGTCATTGATTGGAAATTGCCATGATGCATGTTTGAGATGGCTATAAG
AATGAATTTCTAAATCATAAGAACTGTTCTACACAAAACAGTTGTAGAAA
GAAATGAACTCAGTGACTAGAAGTGCTCACGCAGACACTAAGTGACCATC
TGTCACGCATGCTGTGCAAAGGACCCTCTCATTGAGTGGGAGGTTATGCT
AAATTATCTTGAAGGCTATTTTTAACTCCCGAGACTCTATAATTCCATGA
ACGAGAGCCTGAGGAAAGTCCCAAAGAACTACTACCTAACTCAGCGTATC
CAGCATACCTATCACCACCCTAATCTCACGCCACCCATTAACTTCCTCTA
AGCCCTCTACCTTGCCCCAGACATCCGAACCACATGGCACCCAAGCCGGA
CCCAGACNACCCCCCTTGCCTGCCTGGTCCGACCCACCCCACTGGGCTCC
CACTCGCCCTTCCCGCATTCCTACATACTACCATATCCTCTCCCCCAGTT
T
NNTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACCAAGAAAAGCAAA
TGAACACCTTAAAATTCTCCCCTCTAAATTTCCAGGAAATGCTTTTTAAA
GTATTGATTGATGAATTTATACACACAAAAAAGCTGTTCTTTAAACTGCA
GAAATTTTGAAGAGAAAGATTAAGTGTGCCTTAGACTGATTTTGTAATGA
GAAGGAATTCAGGAGATACATTGCATAACTGGAATTTTGCTGAGATAAAA
CTCCTTTGGATTTATCAACAGCATCAACTCTACATAGCTCTGTGCATTTA
TTACATGGATGTTTTTCATAACACAATGAAAAATGGAAATCCTTGACTTT
CAAAAACATATTGGGTAATAAAAATAAAATGATTTAGATTCATCTAAGAA
CACAGAGAGAATTCGAGAAACAGAAAACATGTAATAAGACTGACTGATAG
GCTTCTAGTAGTGAGGAAAACATGGTCTGGAAAATTCAGATCTAGCAATC
ATGGAACACTTCTTTGGACAAGAAAGACAGACTTCCTTGGCATGTTGGGT
TGATGGACAAGCCCTATGACCTCCTGATGGAAAAGGTTGCCTAGGACAGT
TTCTGAGCCCAACAACATCTTTCAAAGATGCCCTATAATGCCTCAATTCA
GGTACAAGCATGACACATATGTAATAGGCACCCCGGCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_g01.b1 MSMg01no389_g01.b1 CHROMAT_FILE:
MSMg01no389_g01.b1 PHD_FILE: MSMg01no389_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:57 2005
         (139 letters)



>mm_chr1_144761265_144761803
          Length = 539

 Score =  197 bits (102), Expect = 2e-55
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                       
Query: 38  ggaaattgccatgatgcatgtttgagatggctataagaatgaatttctaaatcataagaa 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggaaattgccatgatgcatgtttgagatggctataagaatgaatttctaaatcataagaa 297

                                                     
Query: 98  ctgttctacacaaaacagttgtagaaagaaatgaactcagtg 139
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctgttctacacaaaacagttgtagaaagaaatgaactcagtg 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no389_g01.g1 MSMg01no389_g01.g1 CHROMAT_FILE:
MSMg01no389_g01.g1 PHD_FILE: MSMg01no389_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:57 2005
         (518 letters)



>mm_chr1_144891040_144891957
          Length = 918

 Score =  917 bits (474), Expect = 0.0
 Identities = 507/518 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataccaagaaaagcaaatgaacaccttaaaattctcccctctaaatttccaggaaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aataccaagaaaagcaaatgaacaccttaaaattctcccctctaaatttccaggaaatgc 659

                                                                       
Query: 61  tttttaaagtattgattgatgaatttatacacacaaaaaagctgttctttaaactgcaga 120
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 658 tttttaaagtattgattaatgaatttatacacacaaagaagctgttctttaaactgcaga 599

                                                                       
Query: 121 aattttgaagagaaagattaagtgtgccttagactgattttgtaatgagaaggaattcag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 598 aattttgaagagaaagattaagtgtgccttagactgattttgtaatgagaaggaatccag 539

                                                                       
Query: 181 gagatacattgcataactggaattttgctgagataaaactcctttggatttatcaacagc 240
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 538 gagatacattgcataaccggaattttgccgagataaaactcctttggatttatcaacagc 479

                                                                       
Query: 241 atcaactctacatagctctgtgcatttattacatggatgtttttcataacacaatgaaaa 300
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atcaactttacatagctctgggcatttattacatggatgtttttcataacacaatgaaaa 419

                                                                       
Query: 301 atggaaatccttgactttcaaaaacatattgggtaataaaaataaaatgatttagattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atggaaatccttgactttcaaaaacatattgggtaataaaaataaaatgatttagattca 359

                                                                       
Query: 361 tctaagaacacagagagaattcgagaaacagaaaacatgtaataagactgactgataggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctaagaacacagagagaattcgagaaacagaaaacatgtaataagactgactgataggc 299

                                                                       
Query: 421 ttctagtagtgaggaaaacatggtctggaaaattcagatctagcaatcatggaacacttc 480
           |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 298 ttctagtagtgagggaaacatggaatggaaaattcagatctagcaatcatggaacacttc 239

                                                 
Query: 481 tttggacaagaaagacagacttccttggcatgttgggt 518
           |||||||||| |||||||||||||||||||||||||||
Sbjct: 238 tttggacaaggaagacagacttccttggcatgttgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)