Query= MSMg01no389_g12.b1 MSMg01no389_g12.b1 CHROMAT_FILE:
MSMg01no389_g12.b1 PHD_FILE: MSMg01no389_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:00 2005
(467 letters)
>mm_chr1_6714907_6715774
Length = 868
Score = 845 bits (437), Expect = 0.0
Identities = 461/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Plus
Query: 1 agctgcacctcagcatgctttaaagggatgaagtctggccaataccatcacagaaaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgcacctcagcatgctttaaagggatgaagtctggccaataccatcacagaaaacac 260
Query: 61 cccaggcatttttgaaatttaaaagagcatggggaaggatttcagttttggtcttcttag 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cccaggcatttttgaaatttaaaagagcatgggaaaggatttcagttttggtcttcttaa 320
Query: 121 tgccgtgccaagtttccattagc-ttttgagttaaaaatgctattagatcaaactttagt 179
||| |||||| |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgcagtgccaggtttccattagctttttgagttaaaaatgctattagatcgaactttagt 380
Query: 180 gttggctttgatttttcaaaccctacttttaatacatggtcttaaatgctttaacccccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggctttgatttttcaaaccctacttttaatacatggtcttaaatgctttaacccccc 440
Query: 240 ttttagcccaccattcaccaaaggtagtggaaaagaaaggttattaggacacatgggaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttagcccaccattcaccaaaggtagtggaaaagaaaggttattaggacacatgggaag 500
Query: 300 tggacctatttagaaatatccaatctacattgtcaggattgcattaccagcag-tccagt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tggacctatttagaaatatccaatctacattgtcaggattgcattaccagcaaatccagt 560
Query: 359 tgagcagtgtgaggacagcaaacatgaatcagcagcagtggcacaacccagcagaaacag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagcagtgtgaggacagcaaacatgaatcagcagcagtggcacaacccagcagaaacag 620
Query: 419 ccaggcctccactgaatggccaagtcagcagtagcaaccaggactaatg 467
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaggcctccactgaatggccaagtcagcagtagcaaccaggactaatg 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_g12.g1 MSMg01no389_g12.g1 CHROMAT_FILE:
MSMg01no389_g12.g1 PHD_FILE: MSMg01no389_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:00 2005
(568 letters)
>mm_chr1_6762363_6763330
Length = 968
Score = 1031 bits (533), Expect = 0.0
Identities = 559/572 (97%), Gaps = 8/572 (1%)
Strand = Plus / Minus
Query: 1 tttgtccataactagagcggtgaaggtcagttcctgggctgactacagcactctgagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tttgtccataactagagcggtgaaggtcagttcctgggctgactacagcactctgagatc 709
Query: 61 tagcttcatgaagtcccaggtgaggggataacacctctgtgacttatacattacattgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tagcttcatgaagtcccaggtgaggggataacacctctgtgacttatacattacattgta 649
Query: 121 ttagttgtgaatgagagggagcccagcccagtagagaaacaggtctgggaaataagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 648 ttagttgtgaatgagagggagcccagcccagtagagaaacaggtctgggaaataagaatt 589
Query: 181 tggatggtttactacctgaatatctatggtatattgacattagctattgatgttcatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tggatggtttactacctgaatatctatggtatattgacattagctattgatgttcatgta 529
Query: 241 tgttttgtttatttcagccatgatatgtaaggttactgtgaggattaaattaagtaattg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgttttgaaaatttcagccatgatatgtaaggttactgtgaggattaaattaagtaattg 469
Query: 301 gatgataaaagtaacaacatctagaacataggatcttaacaatactagttttactgtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gatgataaaagtaacaacatctagaacataggatcttaacaatactagttttactgtagt 409
Query: 361 cattaatagcatacttaaaaagaattttttctccaaaaagttgcataacacatttccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cattaatagcatacttaaaaagaattttttctccaaaaagttgcataacacatttccaca 349
Query: 421 ctttttcttctttccttaattctatctgcatcttcacctgaggtagacaagctgtctggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctttttcttctttccttaattctatctgcatcttcacctgaggtagacaagctgtctggg 289
Query: 481 tcaatgcatgctcattattccttcagacttgtctcactttaaagtcac----ttttttcc 536
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 288 tcaatgcatgctcattattccttcagacttgtctcactttaaagtcactttttttttt-- 231
Query: 537 ccccattttttattangtatttagctcattta 568
||||||||||||| ||||||||||||||||
Sbjct: 230 --ccattttttattaggtatttagctcattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
